ggbiplot | A biplot based on ggplot2 | Data Visualization library

 by   vqv R Version: Current License: No License

kandi X-RAY | ggbiplot Summary

kandi X-RAY | ggbiplot Summary

ggbiplot is a R library typically used in Analytics, Data Visualization applications. ggbiplot has no bugs, it has no vulnerabilities and it has low support. You can download it from GitHub.

An implementation of the biplot using ggplot2. The package provides two functions: ggscreeplot() and ggbiplot(). ggbiplot aims to be a drop-in replacement for the built-in R function biplot.princomp() with extended functionality for labeling groups, drawing a correlation circle, and adding Normal probability ellipsoids.
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              ggbiplot has a low active ecosystem.
              It has 257 star(s) with 142 fork(s). There are 25 watchers for this library.
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              It had no major release in the last 6 months.
              There are 38 open issues and 14 have been closed. On average issues are closed in 141 days. There are 8 open pull requests and 0 closed requests.
              It has a neutral sentiment in the developer community.
              The latest version of ggbiplot is current.

            kandi-Quality Quality

              ggbiplot has 0 bugs and 0 code smells.

            kandi-Security Security

              ggbiplot has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.
              ggbiplot code analysis shows 0 unresolved vulnerabilities.
              There are 0 security hotspots that need review.

            kandi-License License

              ggbiplot does not have a standard license declared.
              Check the repository for any license declaration and review the terms closely.
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              Without a license, all rights are reserved, and you cannot use the library in your applications.

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              ggbiplot releases are not available. You will need to build from source code and install.
              Installation instructions are not available. Examples and code snippets are available.

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            ggbiplot Key Features

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            ggbiplot Examples and Code Snippets

            No Code Snippets are available at this moment for ggbiplot.

            Community Discussions

            QUESTION

            How to get a list of eigenvectors in R
            Asked 2021-Oct-19 at 02:07

            When I do the below code on my data, since there are 35 variables the resulting plot is almost useless because of all the overlap. I can't seem to find anywhere that would give me the list of data that's used to make the plot. For instance, I have a factor called avg_sour that has a direction of about 272 degrees and a magnitude of 1. That's one of the few I can actually see. If I had this data in a table, however, I could see clearly what I'm looking for without having to zoom in and out every time. Add to that the fact that this is for a presentation, so I need to be able to make this visible quickly, without them looking at multiple things--but I think I could get away with a crowded graph and a table that explained the crowded portion. Seems like it ought to be simple, but...I'm afraid I haven't found it yet. Any ideas? I can use any package I can find.

            ...

            ANSWER

            Answered 2021-Oct-19 at 02:07

            If your xD4PCA is from prcomp function, then $rotation gives you eigenvectors. See prcomp function - Value.

            You may manually choose and add arrows from xD4PCA$rotation[,1:2]

            I was working on this with sample data ir.pca, which is just simple prcomp object using iris data, and all these jobs are based on source code of ggbiplot.

            Source https://stackoverflow.com/questions/69624205

            QUESTION

            How to change symbols of points for PCA ggplot?
            Asked 2021-Oct-13 at 00:07
            biplot<-ggbiplot(pcobj = PCA,choices= c(1,2),scale = 1,groups = Fdata$Tissue,ellipse = TRUE)+ 
            geom_vline(xintercept = 0, linetype = 3)+geom_hline(yintercept = 0, linetype = 3)         
            
              
            
            ...

            ANSWER

            Answered 2021-Oct-13 at 00:07

            try add geom_point(aes(shape=factor(something))). For an example of iris data,

            Source https://stackoverflow.com/questions/69535483

            QUESTION

            How to make a profile plot (principal component analysis) in R?
            Asked 2021-May-27 at 09:33

            I'm currently running principal component analysis. For the interpretation I want to create a profile (pattern) plot to visualize the correlation between each principal component and the original variables. Is anyone familiar with a package or code to create this in R? I'm using the prcomp() function in R.

            See examples:

            https://canadianaudiologist.ca/predicting-speech-perception-from-the-audiogram-and-vice-versa/ https://blogs.sas.com/content/iml/2019/11/04/interpret-graphs-principal-components.html

            This is similar data to my db:

            ...

            ANSWER

            Answered 2021-May-27 at 09:30

            using your data I did this:

            Source https://stackoverflow.com/questions/67718659

            QUESTION

            How to add/assign color to many groups automatically
            Asked 2021-Apr-17 at 20:13

            I need some help to modify my R script that could assign different color to each group. I always need to specify color name/code manually [e.g., scale_fill_manual(values = c("grey", "red", "yellow", "green"))].

            Complete R script is here

            ...

            ANSWER

            Answered 2021-Apr-17 at 20:13

            scale_color_manual(values=ir.species)

            scale_color_manual(values=1:20) # assumes 20 colours

            Source https://stackoverflow.com/questions/67142313

            QUESTION

            How to get a PCA plot with PC3 and PC4 with ggbiplot
            Asked 2021-Feb-07 at 16:20

            I need some help to get PC3 and PC4 for my data.

            ...

            ANSWER

            Answered 2021-Feb-07 at 16:20

            By including ggbiplot(ir.pca, choices = c(3,4), obs.scale.... we can get PC3 and PC4.

            Source https://stackoverflow.com/questions/66081493

            QUESTION

            How to draw ellipses around PCA plot?
            Asked 2020-Nov-05 at 20:39

            I have a PCA plot that ive been working on a while now (I am not very good at R but this is teaching me a lot, just trying to make this one plot). I am now at the stage where the plot looks how we want it, now we just want to draw ellipses around the replicates. (see plot below)

            Ideally, the ellipses would have the border colour the exact same colour and be filled in with a mostly transparent version of that same colour (see example plot below)

            Many people have suggested using ggbiplot, which i tried but i found the manual very sparse in detail and i didnt really understand how to control the plot. To generate the plot i used the following code:

            ...

            ANSWER

            Answered 2020-Nov-05 at 19:41

            Good suggestion by @Axeman, so you can use geom_polygon():

            Source https://stackoverflow.com/questions/64703699

            QUESTION

            R: ggbiplot - why can't I control the number of legend columns with guide_legend?
            Asked 2020-Jul-23 at 10:13

            I use ggbiplot regularly and can control every aspect of the plot produced using ggplot2 tools, since it inherits from ggplot2...

            In ggplot2, I usually control the number of columns in the legend with a line of the form:

            ...

            ANSWER

            Answered 2020-Jul-23 at 10:13

            It'd be simpler to include the ncol = 2 in the first call to guide_legend(). I.e.

            Source https://stackoverflow.com/questions/63049788

            QUESTION

            Add classifier next to its group in PCA ggplot - R
            Asked 2020-Jul-06 at 22:20

            How can I added the Species classifier next to the centroid in this PCA plot.

            Code:

            ...

            ANSWER

            Answered 2020-Jun-23 at 09:56

            I'm not sure why you would need the ggpubr and ggbiplot packages in this case. You can do this with just ggplot2 (and data.table which you already used in your example).

            Source https://stackoverflow.com/questions/62531891

            QUESTION

            How to change loading labels of biplot in r?
            Asked 2020-Jun-18 at 07:25

            I am struggling with changing the loading labels of biplot. I used prcomp function to run PCA and ggbiplot. I've tried to change it with loading.label.label = c("a","b","c","d"), but it didn't work. I have attached my code and plot below.

            ...

            ANSWER

            Answered 2020-Jun-18 at 07:25

            Not sure you can do this with the ggbiplot function. A workaround would be to change the names in the pca object like this:

            Source https://stackoverflow.com/questions/62443003

            QUESTION

            Plotting the distribution for multiple columns
            Asked 2020-Mar-23 at 17:55

            I would like to plot the distribution of multiple columns of my data set. It has over 820.000 rows and 18 columns. I want to plot all columns except the columns with the dummy variables. I have already been able to create a graphic. But I want to have the values of the x-axis on the y-axis because these are the column values and I want to display their distribution for each column.

            1. Definition of the path ...

            ANSWER

            Answered 2020-Mar-19 at 16:00

            You don't need to combine your dataframe all over again. What you need is either a density plot or histogram.

            Also as good practice, load only the packages required for plotting, in this case it would be maybe ggplot2 and tidyr.

            For example, I just used an example with 5 of the column names I can see in your data:

            Source https://stackoverflow.com/questions/60758971

            Community Discussions, Code Snippets contain sources that include Stack Exchange Network

            Vulnerabilities

            No vulnerabilities reported

            Install ggbiplot

            You can download it from GitHub.

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            For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .
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          • CLI

            gh repo clone vqv/ggbiplot

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            git@github.com:vqv/ggbiplot.git

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