store_model | Work with JSON-backed attributes as ActiveRecord-ish models | JSON Processing library
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Work with JSON-backed attributes as ActiveRecord-ish models
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QUESTION
I would like to calculate an aggregated performance measure (precision) for all iterations of a leave-one-out resampling.
For a single iteration, the result for thie measure can only be 0, 1 (if positive class is predicted) or NaN (if negative class is predicted.
I want to aggregate this over the existing values of the whole resampling, but the aggregation result is always NaN (naturally, it will be NaN for many iterations). I could not figure out (from the help page for ResampleResult$aggregate()) how to do this:
...ANSWER
Answered 2021-Apr-14 at 11:38I have doubts if this is a statistically sound approach, but technically you can set the aggregating function for a measure by overwriting the aggregator
slot:
QUESTION
I have been trying to use mlr3 to do some hyperparameter tuning for xgboost. I want to compare three different models:
- xgboost tuned over just the alpha hyperparameter
- xgboost tuned over alpha and lambda hyperparameters
- xgboost tuned over alpha, lambda, and maxdepth hyperparameters.
After reading the mlr3 book, I thought that using AutoTuner for the nested resampling and benchmarking would be the best way to go about doing this. Here is what I have tried:
...ANSWER
Answered 2021-Mar-24 at 09:04To see whether tuning has an effect, you can just add an untuned learner to the benchmark. Otherwise, the conclusion could be that tuning alpha is sufficient for your example.
I adapted the code so that it runs with an example task.
QUESTION
I have just started using mlr3 and still very unfamiliar with the syntax, I have two questions:
- How can I access the coefficient from the trained Logistic Regression in mlr3?
- I am dealing with a extremely imbalanced dataset, 98% vs 2%, and there are over 2million rows in this dataset, I tried to use SMOTE method, but it is very slow, because it can be done very soon in python, so is there any mistake in my code? Here is my code:
ANSWER
Answered 2021-Mar-15 at 00:41Here's what I gathered for your question #1
Create a data set with approximately 98% 1's and 2% 0's
Make tasks of training and testing
(1) Create overbalancing po thing
(2) Create learner this way, the way in you original code won't work with po
Train the learner on train set
Test on test set
QUESTION
Recently I am learning about the nested resampling in mlr3 package. According to the mlr3 book, the target of nested resampling is getting an unbiased performance estimates for learners. I run a test as follow:
...ANSWER
Answered 2021-Feb-26 at 12:50The result shows that the 3 hyperparameters chosen from 3 inner resampling are not garantee to be the same.
It sounds like you want to fit a final model with the hyperparameters selected in the inner resamplings. Nested resampling is not used to select hyperparameter values for a final model. Only check the inner tuning results for stable hyperparameters. This means that the selected hyperparameters should not vary too much.
Yes, you are comparing the aggregated performance of all outer resampling test sets (
rr$aggregate()
) with the performances estimated on the inner resampling test sets (lapply(rr$learners, function(x) x$tuning_result)
).The aggregated performance of all outer resampling iterations is the unbiased performance of a ranger model with optimal hyperparameters found by grid search. You can run
at$train(task)
to get a final model and report the performance estimated with nested resampling as the unbiased performance of this model.
QUESTION
I try to run the resampling process with parallelization in mlr3. But I find that it always slower than the sequential plan. Here is my code and result:
...ANSWER
Answered 2021-Feb-23 at 09:49The random forest implementation is using threading per default in the current CRAN release of mlr3learners (the default will change in the next release). So you are comparing two parallel executions, and the second one via multisession comes with a slightly larger overhead.
QUESTION
This is a really basic question, but I haven't found the answer on other sites, so I am kind of forced to ask about it here.
I fitted my "classif.ranger" learner usin benchmark(design,store_models) function form mlr3 library and I need to acces the fitted parameters (obv). I found nothing about it in the benchmark documentation, so I tried to do it the hard way: -> I set store_models to TRUE -> I tried to acces the model using fitted(), but it returned NULL.
I know the question is basic and that I probably am doing smth stupid (for ex. misreading the documentation or smth like that) but I just have no idea of how to acctualy access the parameters... please help.
If it is needed in such (probably) trivial situation, here comes the code:
...ANSWER
Answered 2021-Jan-21 at 21:28You can use getBMRModels()
to get the models, which will tell you what hyperparameters were used to fit them. See the benchmark section of the documentation.
QUESTION
I'm trying to migrate a ,currently broken because of breaking changes, utility that solves a .mps using IBM's APIs.
The original code, uses an empty model.tar.gz file, creates a deployment and passes the .mps file tp a new job.
The (python)code looks like this :
ANSWER
Answered 2020-Nov-16 at 16:46The answer was provided by Alex Fleischer on another forum.
A full example can be found here:
https://medium.com/@AlainChabrier/solve-lp-problems-from-do-experiments-9afd4d53aaf5
The above link(which is similar to the code in my question) shows an example with a ".lp" file but it's exactly the same for a ".mps" file too.
(no note that the model type is do-cplex_12.10 , not do-docplex_12.10)
My problem was that I was using an empty model.tar.gz file.
Once you have the .lp/.mps file in the archive, everything works as expected
QUESTION
I am walking through great examples from the MLR3 package (mlr3gallery:imbalanced data examples), and I was hoping to see an example that combines hyper parameter tuning AND an imbalance correction.
From the link above, as description of what I am trying to achieve:
To keep runtime low, we define the search space only for the imbalacy correction method. However, one can also jointly tune the hyperparameter of the learner along with the imbalance correction method by extending the search space with the learner’s hyperparameters.
Here is an example that comes close - mlr3 PipeOps: Create branches with different data transformations and benchmark different learners within and between branches
So we can (mis)use missuse's great example from this as a walkthough:
...ANSWER
Answered 2020-May-19 at 12:22As soon as you construct a piped learner the IDs of the underlaying params change, as they are added a prefix.
You can always check the param_set
of the learner. In your example it is graph2$param_set
. There you will see that the params you are looking for are the following:
QUESTION
I have a follow-up question to this one. As in the initial question, I am using the mlr3verse, have a new dataset, and would like to make predictions using parameters that performed well during autotuning. The answer to that question says to use at$train(task). This seems to initiate tuning again. Does it take advantage of the nested resampling at all by using those parameters?
Also, looking at at$tuning_result there are two sets of parameters, one called tune_x and one called params. What is the difference between these?
Thanks.
Edit: example workflow added below
...ANSWER
Answered 2020-May-07 at 10:30As ?AutoTuner
tells, this class fits a model with the best hyperparameters found during the tuning. This model is then used for prediction, in your case to newdata when calling its method .$predict_newdata()
.
Also in ?AutoTuner
you see the documentation linked to ?TuningInstance
. This then tells you what the $tune_x
and params
slots represent. Try to look up the help pages next time - that's what they are there for ;)
This seems to initiate tuning again.
Why again? It does it in the first place, on all observations of task
. I assume you might confuse yourself by the common misconception between "train/predict" vs. "resample".
Read more about the theoretical differences of both to understand what both are doing.
They have completely different aims and are not connected.
Maybe the following reprex makes it more clear.
QUESTION
I'm migrating an application that formerly ran on IBM's DoCloud to their new API based off of Watson. Since our application doesn't have data formatted in CSV nor a separation between the model and data layers it seemed simpler to upload an LP file along with a model file that reads the LP file and solves it. I can upload and it claims to solve correctly but returns empty solve status. I've also output various model info (e.g. number of variables) and everything is zeroed out. I've confirmed the LP isn't blank - it has a trivial MILP.
Here is my model code (most of which is taken directly from the example at https://dataplatform.cloud.ibm.com/exchange/public/entry/view/50fa9246181026cd7ae2a5bc7e4ac7bd):
...ANSWER
Answered 2020-Mar-09 at 06:53I tryed something very similar from your code and the solution is included in the payload when the job is completed.
See this shared notebook: https://dataplatform.cloud.ibm.com/analytics/notebooks/v2/cfbe34a0-52a8-436c-99bf-8df6979c11da/view?access_token=220636400ecdf537fb5ea1b47d41cb10f1b252199d1814d8f96a0280ec4a4e1e
I the last cells, after the job is completed, I print the status:
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Install store_model
Assigned attributes must be a String, Hash, Array of Hashes, or StoreModel. For example, if the attributes are coming from a controller, be sure to convert any ActionController::Parameters as needed.
Any changes made to a StoreModel instance requires the attribute be re-assigned; Rails doesn't track mutations of objects. For example: self.my_stored_models = my_stored_models.map(&:as_json)
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