esearch | A ruby driver for elasticsearch that is ONLY A DRIVER | REST library
kandi X-RAY | esearch Summary
kandi X-RAY | esearch Summary
[Code Climate] Terminate the [esearch API] in a friendly ruby PORO api.
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Top functions reviewed by kandi - BETA
- Setup the request object .
- Executes a command against the expected value .
- Parses an exception .
- Raise remote status
- Run a command
- Expect the given query to the result of the result
- Parses the response content .
- Asserts the response
- Checks if the block is compatible for testing
esearch Key Features
esearch Examples and Code Snippets
Community Discussions
Trending Discussions on esearch
QUESTION
I'm trying to get some data using the NCBI API. I am using requests
to make the connection to the API.
What I'm stuck on is how do I convert the XML object that requests returns into something that I can parse?
Here's my code for the function so far:
...ANSWER
Answered 2021-Jun-08 at 20:04You would use something like BeautifulSoup for this ('this' being 'convert and parse the xml object').
What you are calling your xml object is still the response object, and you need to extract the content from that object first.
QUESTION
Assume an input table (intable.csv
) that contains ID numbers in its second column, and a fresh output table (outlist.csv
) into which the input file - extended by one column - is to be written line by line.
ANSWER
Answered 2021-May-06 at 18:32This would happen if esearch
reads from standard input. It will inherit the input redirection from the while
loop, so it will consume the rest of the input file.
The solution is to redirect is standard input elsewhere, e.g. /dev/null
.
QUESTION
I've been using Tailwind with the "Purge" option to make the final css file a lot smaller and successfully. However, I've been wondering about the efficience of my methods. I'm working on projects that have got a lot of subfolders, which I all specify like:
...ANSWER
Answered 2021-Feb-01 at 18:05You don't have to target every single sub-folder, the glob
pattern will match those for you. Using **
will match zero or more folders.
QUESTION
I try to use IMAP object from Chilkat AcitveX component.
...ANSWER
Answered 2021-Jan-17 at 21:17Registering object by using:
regsvr32 ChilkatAx-9.5.0-win32.dll
Fix this issue.
QUESTION
I have experience with C and I'm starting to approach Python, mostly for fun. I am trying to scrape this page here https://www.justetf.com/it/find-etf.html?groupField=index&from=search&/it/find-etf.html%3F1-1.0-esearch-etfsPanel. Since the table, with the content I'm interested on, is dynamically created after connecting to the page, I'm using:
- Selenium to load the page in the browser
- Beautiful soup 4 for scraping the data loaded
At the moment I'm able to scrape all the fields of interest of the first 25 entries, the ones which are loaded once connected to the page. I can have up to 100 entries in one page but there are 1045 entries in total, which are split in different pages. The problem is that the url is the same for all the pages and the content of the table is dynamically loaded at runtime. What I would like to do is find a way to be able to scrap all the entries, which are 1045. Reading through the internet I have understood I should send a proper POST request (I've also founded that they are retrieving data from https://www.finanztreff.de/) from my code, get the data from the response and scrape it. I can see two possibilities :
- Retrieve all the entries in once
- Retrieve one page after the other and scrape one after the other
I have no idea how to build up the POST request. I think there is no need to post the code but if needed I can re-edit the question. Thanks in advance to everybody.
EDITED
Here you go with some code
...ANSWER
Answered 2020-Nov-13 at 11:44This should do the trick (getting all the data at once):
QUESTION
I am trying to execute this command below. I have a list of 100 samples in 100_samples_list.txt
. I want to use each sample as input and execute the command and output to OUTPUT.csv. However, in due process I also want to execute sleep for 2 seconds. How do I do here with this code?
ANSWER
Answered 2020-Oct-18 at 11:22I assume you want to wait 2 seconds before starting a new job:
QUESTION
This has been bugging me for while as I feel I have few pieces of the puzzle but I cant put them all together
So my goal is to be able to search all .pdfs in a given location for a keyword or phrase within the content of the files, not the filename, and then use the results of the search to populate an excel spreadsheet.
Before we start, I know that this easy to do using the Acrobat Pro API, but my company are not going to pay for licences for everyone so that this one macro will work.
The windows file explorer search accepts advanced query syntax and will search inside the contents of files assuming that the correct ifilters are enabled. E.g. if you have a word document called doc1.docx and the text inside the document reads "blahblahblah", and you search for "blah" doc1.docx will appear as the result. As far as I know, this cannot be acheived using the FileSystemObject, but if someone could confirm either way that would be really useful?
I have a simple code that opens an explorer window and searches for a string within the contents of all files in the given location. Once the search has completed I have an explorer window with all the files required listed. How do I take this list and populate an excel with the filenames of these files?
...ANSWER
Answered 2020-Aug-12 at 09:37Assuming the location is indexed you can access the catalog directly with ADO (add a reference to Microsoft ActiveX Data Objects 2.x):
QUESTION
I am using Entrez to search for articles on Pubmed. Is it possible to use Entrez to also determine the number of citations for each article that is found using my search parameters? If not, is there an alternative method that I can use? My googling hasn't turned up much, so far.
NOTE: number of citations references (in my context) the number of times that the specific article in question has been cited in OTHER articles.
One thing that I have found: https://gist.github.com/mcfrank/c1ec74df1427278cbe53 which may indicate that I can get the citation number for articles that are also in the Pubmed DB, but it was unclear (to me) how I can use this to determine the number of citations for each article.
The following is the code that I am currently using (I'd like to include a 'print' line of the number of citations):
...ANSWER
Answered 2020-May-28 at 18:19I solved this by writing script that crawls through the actual website where the publication is hosted (using the DOI to find the web address), and then the script parses out the citation amount from the xmlx data of the site. This method works for the specific journal I am interested in (only), unfortunately.
An alternative is to use WebOfScience, if anyone is interested. It does this and gives a lot more citation data, such as citations per year as well as total citation number and a lot more data. The downside is that WebOfScience is not a free service.
QUESTION
I have produced the following histogram in the programming language R
...ANSWER
Answered 2020-May-18 at 15:45A density plot is a way of showing the density of discrete events on the x axis as a smoothed value on the y axis. You have annual counts, which doesn't lend itself to a density plot. Probably the nearest equivalent is to have a smoothed area plot. However, to do this fairly, you will have to annualize your 2020 data, otherwise it will not be an accurate reflection of publication rate.
I think this is about as close as you're going to get:
QUESTION
I am working upon a pubmed project where I need to extract the ids for free full text and free pmc articles.This is what my code is.
...ANSWER
Answered 2020-Apr-26 at 00:51Use multithreading to download concurrently. Recommend a simple framework.
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