savgol | Implements Savitzky-Golay filters | Widget library

 by   princelab Ruby Version: Current License: Non-SPDX

kandi X-RAY | savgol Summary

kandi X-RAY | savgol Summary

savgol is a Ruby library typically used in User Interface, Widget applications. savgol has no bugs, it has no vulnerabilities and it has low support. However savgol has a Non-SPDX License. You can download it from GitHub.

Provides implementations of Savitzky-Golay smoothing (filtering). The gem is based on the scipy implementation (gives exactly the same result). A good explanation of the process may be found here on stackexchange.
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              savgol has a low active ecosystem.
              It has 10 star(s) with 5 fork(s). There are 1 watchers for this library.
              OutlinedDot
              It had no major release in the last 6 months.
              savgol has no issues reported. There are 1 open pull requests and 0 closed requests.
              It has a neutral sentiment in the developer community.
              The latest version of savgol is current.

            kandi-Quality Quality

              savgol has no bugs reported.

            kandi-Security Security

              savgol has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

            kandi-License License

              savgol has a Non-SPDX License.
              Non-SPDX licenses can be open source with a non SPDX compliant license, or non open source licenses, and you need to review them closely before use.

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              savgol releases are not available. You will need to build from source code and install.
              Installation instructions are not available. Examples and code snippets are available.

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            savgol Examples and Code Snippets

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            Community Discussions

            QUESTION

            Efficient way of applying a savitzky golay filtering on data.table rows for certain column?
            Asked 2021-Jun-03 at 19:46

            I wrote a function to apply a savitzky golay filter to each row in a data.table. The first column having measurement values is given as an argument and all later columns contain measurements values to be filtered too. The processed rows are updated in-place.

            My function works, but is slow.

            How could the function be changed in order to work more efficient and more data.table like?

            MWE:

            ...

            ANSWER

            Answered 2021-Jun-03 at 19:46

            QUESTION

            Utilising Savitzky-Golay Filter in R vs Python
            Asked 2021-May-28 at 12:51

            I'm currently trying to render the same results in R as in Python but think I must be misunderstanding the Savitzky-Golay filter. I have the below Python code:

            ...

            ANSWER

            Answered 2021-May-28 at 12:14

            The SciPy function savgol_filter has several options for handling the ends of the input array; see the mode parameter in the docstring.

            It looks like the behavior of the R function savgol corresponds to mode='constant' in SciPy's savgol_filter. Except for the first value (which is effectively 0 in both cases), this output of savgol_filter matches the output of savgol in R:

            Source https://stackoverflow.com/questions/67737701

            QUESTION

            What causes "On entry to DLASCLS parameter number 4 had an illegal value" error andhow can I resolve this?
            Asked 2020-Nov-30 at 08:37

            I use a script to work on a number of big .csv files one after another. However, since yesterday I get an error which I neither can explain nor resolve, though I haven't changed anything in the python script.

            I have a simplified version of the script. It runs when I don't try to plot the data, remove the savgol filter or decrease the number of data points. In the as is version provided below, it stops in the second loop with this error:

            ** On entry to DLASCLS parameter number 4 had an illegal value
            ** On entry to DLASCLS parameter number 4 had an illegal value
            Traceback (most recent call last):
            File "simplified_problem.py", line 29, in
            ysmooth = savgol_filter(y,51,5)
            File "C:\Programs\Python\Python37\lib\site-packages\scipy\signal_savitzky_golay.py",
            line 337, in savgol_filter
            coeffs = savgol_coeffs(window_length, polyorder, deriv=deriv, delta=delta)
            File "C:\Programs\Python\Python37\lib\site-packages\scipy\signal_savitzky_golay.py", line 139, in savgol_coeffs
            coeffs, _, _, _ = lstsq(A, y)
            File "C:\Programs\Python\Python37\lib\site-packages\scipy\linalg\basic.py", line 1218, in lstsq
            raise LinAlgError("SVD did not converge in Linear Least Squares")
            numpy.linalg.LinAlgError: SVD did not converge in Linear Least Squares

            I suspect the error has nothing to do with the script itself, since it only appeared after a major window update (currently version 10.0.19041).

            Has anybody an idea what exactly causes the problem and how it can be solved? Please let me know if any additional information is needed. Your help would be much appreciated.

            ...

            ANSWER

            Answered 2020-Nov-30 at 08:37

            You can find the answer to your question here. You are right related to Windows Update, and ultimately related to OpenBlas, which is used by numpy to perform linear algebra computations. Sadly the "solutions" are not really satisfactory: you must either wait for Microsoft to fix it in the next (hopefully!) Windows update, or install numpy through conda, which is using Intel MKL as backend instead of OpenBlas.

            Source https://stackoverflow.com/questions/64698111

            QUESTION

            Applying Savitzky-Golay filter on a pandas dataframe
            Asked 2020-Oct-07 at 13:23

            I have the following time series data set:

            ...

            ANSWER

            Answered 2020-Oct-07 at 13:16

            QUESTION

            Lowpass filter to get second derivative of data from pandas dataframe
            Asked 2020-Jun-17 at 12:41

            I have a dataframe (an excerpt is shown below):

            ...

            ANSWER

            Answered 2020-Jun-17 at 12:41

            From this answer here. They used shift to compute the second derivative:

            Source https://stackoverflow.com/questions/62428593

            QUESTION

            Savgol filter over dataframe columns
            Asked 2019-Sep-27 at 13:08

            I'm trying to apply a savgol filter from SciPy to smooth my data. I've successfully applied the filter by selecting each column separately, defining a new y value and plotting it. However I wanted to apply the function in a more efficient way across a dataframe.

            ...

            ANSWER

            Answered 2019-Sep-27 at 13:08

            In order to use the filter first create a function that takes a single argument - the column data. Then you can apply it to dataframe columns like this:

            Source https://stackoverflow.com/questions/58133737

            QUESTION

            is there a simple method to smooth a curve without taking into account future values and without a time shift?
            Asked 2019-Sep-06 at 01:05

            I have a Unix time series (x) with an associated signal value (y) which is generated every minute, dropping the first value and appending a new one. I am trying to smooth the resulting curve without loosing time accuracy with a specific emphasis on the final value of the smoothed curve which will be written to a database. I would like to be able to adjust the smoothing to a considerable degree.

            I have studied (as mathematical layman, more or less) all options I could find and I could master. I came across Savitzki Golay which looked perfect until I realized it works well on past data but fails to produce a reliable final value if no future data is available for smoothing. I have tried many other methods which produced results but could not be adjusted like Savgol.

            ...

            ANSWER

            Answered 2019-Sep-06 at 01:05

            This really depends on why you are smoothing the data. Every smoothing method will have side effects, such as letting some 'noise' through more than other. Research 'phase response of filtering'.

            A common technique to avoid the problem of missing data at the end of a symmetric filter is to just forecast your data a few points ahead and use that. For example, if you are using a 5-term moving average filter you will be missing 2 data points when you go to calculate your end value.

            To forecast these two points, you could use the auto_arima() function from the pmdarima module, or look at the fbprophet module (which I find quite good for this kind of situation).

            Source https://stackoverflow.com/questions/57812797

            QUESTION

            Python: return function arguments for a condition
            Asked 2019-Aug-10 at 07:47

            I'm new to Python and trying to automate finding optimum operating parameters of a savgol filter that feeds into PLS analysis. First, I had a prediction function calculate results and plot them.

            To try and automate optimising, I have a for loop that goes over a range of numbers then feeds this number into t. I want the filter which then goes into the function. The aim is to find the smallest possible result after applying the function and return the arguments that gave rise to it.

            I'm not sure how to do this. Also, I don't want the for loop to produce plot every single time. Do I just cut and paste the section of code that does this into the loop function?

            ...

            ANSWER

            Answered 2019-Aug-10 at 07:47

            If I get your problem right, you want to loop through bunch of hyper parameters and return not just the minimum that their iterations yielded but also the parameters which yielded it.

            If you want your arguments i.e derivative & windowlength to be returned , just try

            Source https://stackoverflow.com/questions/57257568

            QUESTION

            smooth signal and find peaks
            Asked 2019-May-28 at 00:20

            Given I have an X and Y array such that:

            ...

            ANSWER

            Answered 2019-May-28 at 00:20

            Here is a graphical fitter using your data and a simple equation, a Fourier series 1 Term with offset, that appears to give an automatic smooth fit.

            Source https://stackoverflow.com/questions/56332765

            QUESTION

            Fitting a Lognormal Distribution in Python using CURVE_FIT
            Asked 2017-Apr-06 at 01:25

            I have a hypothetical y function of x and trying to find/fit a lognormal distribution curve that would shape over the data best. I am using curve_fit function and was able to fit normal distribution, but the curve does not look optimized.

            Below are the give y and x data points where y = f(x).

            ...

            ANSWER

            Answered 2017-Apr-06 at 00:58

            Note that if a lognormal curve is correct and you take logs of both variables, you should have a quadratic relationship; even if that's not a suitable scale for a final model (because of variance effects -- if your variance is near constant on the original scale it will overweight the small values) it should at least give a good starting point for a nonlinear fit.

            Indeed aside from the first two points this looks fairly good:

            -- a quadratic fit to the solid points would describe that data quite well and should give suitable starting values if you then want to do a nonlinear fit.

            (If error in x is at all possible, the lack of fit at the lowest x may be as much issues with error in x as error in y)

            Incidentally, that plot seems to hint that a gamma curve may fit a little better overall than a lognormal one (in particular if you don't want to reduce the impact of those first two points relative to points 4-6). A good initial fit for that can be had by regressing log(y) on x and log(x):

            The scaled gamma density is g = c.x^(a-1) exp(-bx) ... taking logs, you get log(g) = log(c) + (a-1) log(x) - b x = b0 + b1 log(x) + b2 x ... so supplying log(x) and x to a linear regression routine will fit that. The same caveats about variance effects apply (so it might be best as a starting point for a nonlinear least squares fit if your relative error in y isn't nearly constant).

            Source https://stackoverflow.com/questions/43242877

            Community Discussions, Code Snippets contain sources that include Stack Exchange Network

            Vulnerabilities

            No vulnerabilities reported

            Install savgol

            You can download it from GitHub.
            On a UNIX-like operating system, using your system’s package manager is easiest. However, the packaged Ruby version may not be the newest one. There is also an installer for Windows. Managers help you to switch between multiple Ruby versions on your system. Installers can be used to install a specific or multiple Ruby versions. Please refer ruby-lang.org for more information.

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