rcov | The new home of RCov on GitHub | Portfolio library

by relevance Ruby Version: Current License: Non-SPDX

X-Ray Key Features Code Snippets Community Discussions(3)Vulnerabilities Install Support

kandi X-RAY | rcov Summary

rcov is a Ruby library typically used in Web Site, Portfolio applications. rcov has no bugs, it has no vulnerabilities and it has low support. However rcov has a Non-SPDX License. You can download it from GitHub.

The new home of RCov on GitHub

Support

Quality

Security

License

Reuse

Support

rcov has a low active ecosystem.

It has 417 star(s) with 65 fork(s). There are 31 watchers for this library.

It had no major release in the last 6 months.

There are 16 open issues and 79 have been closed. On average issues are closed in 385 days. There are 1 open pull requests and 0 closed requests.

It has a neutral sentiment in the developer community.

The latest version of rcov is current.

Quality

rcov has 0 bugs and 0 code smells.

Security

rcov has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

rcov code analysis shows 0 unresolved vulnerabilities.

There are 0 security hotspots that need review.

License

rcov has a Non-SPDX License.

Non-SPDX licenses can be open source with a non SPDX compliant license, or non open source licenses, and you need to review them closely before use.

Reuse

rcov releases are not available. You will need to build from source code and install.

Installation instructions, examples and code snippets are available.

Top functions reviewed by kandi - BETA

kandi has reviewed rcov and discovered the below as its top functions. This is intended to give you an instant insight into rcov implemented functionality, and help decide if they suit your requirements.

This method is called when there is a non - line .
Compare the state of the state of the current state machine .
Returns true if the code is a previous line .
Processes the diff between two lines
Create a task .
Analyze the code code .
Finds multiple lines in a single line .
Create a block for a crossline .
takes a number of lines and returns the number of lines
Copy the files to the templates

Get all kandi verified functions for this library.

rcov Key Features

No Key Features are available at this moment for rcov.

rcov Examples and Code Snippets

No Code Snippets are available at this moment for rcov.

Community Discussions

Trending Discussions on rcov

Gelman-Rubin statistic for MCMCglmm model in R

GWAS sommer r2 scores

predict function in R sommer v 4.1.1

QUESTION

Gelman-Rubin statistic for MCMCglmm model in R

Asked 2021-May-21 at 01:31

I have a multivariate model with this (approximate) form:

...

ANSWER

Answered 2021-May-21 at 01:08

The gelman.diag requires a mcmc.list. If we are running models with different set of parameters, extract the 'Sol' and place it in a list (Below, it is the same model)

Source https://stackoverflow.com/questions/67629517

QUESTION

GWAS sommer r2 scores

Asked 2021-Mar-23 at 13:59

I am trying to get the r2 values for each marker in a GWAS using the GWAS function in the r package "sommer". From the documentation I see they should be in the object mix1$scores: scores A dataframe with as many columns as markers analyzed and 5 rows containingthe following:beta: marker effects.score: marker scores (-log_10p) for the traits.Fstat: F-statistic associated to the test.R2: R2 value for each marker.R2s: R2 value for each marker scaled

However, in my model, only marker scores are listed.

Example:

...

ANSWER

Answered 2021-Mar-23 at 13:59

the GWAS function was refactored to use C++ code starting from 4.1.2 and some additional metrics like r2 were removed from the output. Those additional metrics will be brought back for 4.1.3. On the meantime, you can always go back to versions 4.1.1 or older to get that metric.

Cheers, Eduardo

Source https://stackoverflow.com/questions/66764318

QUESTION

predict function in R sommer v 4.1.1

Asked 2020-Nov-11 at 04:29

In the newest version of the sommer package, some adaptations to the predict function have been made, unfortunately, I am having issues with it in the newest version.

if I do not specify any classify variable:

predict.mmer(modelh) Error in strsplit(classify, ":") : non-character argument

predict.mmer(modelh, classify = "GEN") Error in [.data.frame(object$dataOriginal, , c(colnames(DTX), ignored, : undefined columns selected

my model looks like this:

mmer(data = data, fixed = value ~ 1 , random = ~ GEN + ROWf + COLf + spl2D(ROW,COL), rcov = ~vs(units))

further question: in the model above, I am getting all the same values in the model$fitted vector, which is equal to the intercept. As I understand, the fitted value should also include random effects like GEN, ROWf, ... . Am I misunderstanding something here?

Appreciate any advice, Best Regards, Hermann

...

ANSWER

Answered 2020-Nov-11 at 04:29

since the 4.1.1 version the predict function is not used anymore to get fitted values, but to obtain adjusted means for an specific classify argument. Therefore, the classify argument cannot be skipped.

If you need fitted values now the fitted() function should return what you're looking for.

Now, the issue with using the classify must come from the use of the spl2D() function outside of the vs() function. You may want to download the newest version from GitHub (version 4.1.2) and try with:

Source https://stackoverflow.com/questions/64151213

Community Discussions, Code Snippets contain sources that include Stack Exchange Network

Vulnerabilities

No vulnerabilities reported

Install rcov

De-compress the archive and enter its top directory. Then type:. This simple step installs rcov under the default location for Ruby libraries. You can also customize the installation by supplying some options to setup.rb. Try ruby setup.rb --help.
will install rcov without building the rcovrt extension.