virolution | WIP Viral Evolution Simulation

virolution is a Rust library. virolution has no bugs, it has no vulnerabilities and it has low support. You can download it from GitHub.

This tool simulates a virus population under static selective pressure with single-nucleotide polymorphism and recombination in discrete generations. The host population is kept constant for each generation, while the virus population may change in number and composition. Multiple simulations can be run in parallel with controlled mixing. As input, the simulation requires model parameters, a wildtype sequence and a file with a schedule for all migration and sampling events. As output, multiple fasta files with samples of the populations at each sampling event are generated.