msr | A Rust library for industrial automation
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A Rust library for industrial automation.
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QUESTION
My codes in following
...ANSWER
Answered 2021-Jun-08 at 09:22To be able to fiddle with the models after resampling its best to call resample with store_models = TRUE
Using your example
QUESTION
I have followed below steps to install and run pktgen-dpdk. But I am getting "Illegal instruction" error and application stops.
System Information (Centos 8)
...ANSWER
Answered 2021-May-21 at 12:25Intel Xeon E5-2620
is Sandy Bridge CPU which officially supports AVX and not AVX2.
DPDK 20.11 meson build, ninja -C build
will generate code with AVX
instructions and not AVX2
. But (Based on the live debug) PKTGEN forces the compiler to add AVX2 to be inserted, thus causing illegal instruction.
Solution: edit meson.build
in line 22
from
QUESTION
when I run the code below for training a model in mlr3proba after encoding and scaling my dataset with mlr3pipeline:
...ANSWER
Answered 2021-Apr-30 at 15:21You need to wrap the learner in the GraphLearner PipeOp:
QUESTION
I am using mlr3proba
package for machine learning survival analysis.
My dataset contains factor, numeric and integer features.
I used 'scale' and 'encode' pipeops to preprocess my dataset for deephit and deepsurv neural network methods as following codes:
ANSWER
Answered 2021-Apr-26 at 07:15Hi thanks for using mlr3proba! The reason for this is because the parameter names change when wrapped in the pipeline, you can see this in the example below. There are a few options to solve this, you could change the parameter ids to match the new names after wrapping in PipeOps (Option 1 below), or you could specify the tuning ranges for the learner first then wrap it in the PipeOp (Option 2 below), or you could use an AutoTuner and wrap this in the PipeOps. I use the final option in this tutorial.
QUESTION
I run the code below. If I deactivate instantiation (as shown), the results of my benchmark comparison will be different for the three benchmark experiments and the conclusion which learner performs better may be different.
How can I adress this issue? One way may be to average over a large number of resamplings. I could write code for this but maybe this is an option already when calling "benchmark"?
...ANSWER
Answered 2021-Apr-20 at 18:11It looks to me that you may want to use repeated CV to minimize variability introduced by partitioning.
Instead of resampling = rsmp("cv", folds = 20)
you could use resampling = rsmp("repeated_cv", folds = 20, repeats = 100)
and create 100 different resampling scenarios and benchmark all your learners across these.
This is a common approach in ML to reduce the impact of a single partitioning.
QUESTION
For survival analysis, I am using mlr3proba
package of R.
My dataset consists of 39 features(both continuous and factor, which i converted all to integer and numeric) and target (time & status).
I want to tune hyperparameter: num_nodes, in Param_set
.
This is a ParamUty
class parameter with default value: 32,32
.
so I decided to transform it.
I wrote the code as follows for hyperparamters optimization of surv.deephit
learner using 'nested cross-validation' (with 10 inner and 3 outer folds).
ANSWER
Answered 2021-Apr-17 at 08:46Hi thanks for using mlr3proba. I have actually just finished writing a tutorial that answers exactly this question! It covers training, tuning, and evaluating the neural networks in mlr3proba. For your specific question, the relevant part of the tutorial is this:
QUESTION
I would like to calculate an aggregated performance measure (precision) for all iterations of a leave-one-out resampling.
For a single iteration, the result for thie measure can only be 0, 1 (if positive class is predicted) or NaN (if negative class is predicted.
I want to aggregate this over the existing values of the whole resampling, but the aggregation result is always NaN (naturally, it will be NaN for many iterations). I could not figure out (from the help page for ResampleResult$aggregate()) how to do this:
...ANSWER
Answered 2021-Apr-14 at 11:38I have doubts if this is a statistically sound approach, but technically you can set the aggregating function for a measure by overwriting the aggregator
slot:
QUESTION
I have a Rocket Lake CPU(11900K), but perf does not support access power events with it yet, how can I do it?
The perf events list:
pastebin.com + tcsSdxUx
My OS: Ubuntu 20.10 Kernel 5.12-RC6 perf version: 5.12-RC6
I can read the Rapl value with rapl-read.c (the link: http://web.eece.maine.edu/~vweaver/projects/rapl/)
But rapl-read.c can not use to profiling the runing program. I hope to do profiling the runing program not only power events but also cycles, branch, etc., The SoCwatch from Intel can not do so much things.
Is there any way to add Rocket Lake power events support to perf ? I dont know the raw power events counter.
update #1:
the uname -a
output:
Linux u128 5.12.0-051200rc6-generic #202104042231 SMP Sun Apr 4 22:33:57 UTC 2021 x86_64 x86_64 x86_64 GNU/Linux
update #2:
rapl-read -m
output
ANSWER
Answered 2021-Apr-12 at 00:49Support of RKL in the intel_rapl driver was added in v5.9-rc5 and the core and uncore perf events were added in v5.11-rc1. Are you sure you have v5.12-rc6? What does uname -a
print? Ubuntu 20.10 is based on v5.8 + other backported patches (one of which provides support for all the of uncore_imc
events available on modern Intel client processors).
The perf_event subsystem lets you only use the architectural events if it's running on an unsupported processor model. But you can still use the raw event encoding as documented in the perf man pages. This approach is only reliable for events without constraints because perf_event
isn't aware of any constraints that may exist on an unsupported model. Most events don't have constraints, so this isn't a major problem.
I don't know why you think that rapl-read
can't be used to profile a program. There is no program-specific or core-specific RAPL domains. You can run rapl-read
with the -m
option to directly access MSRs to take energy readings, then your program, then run rapl-read
again. The difference between the two readings gives you energy consumption for each of the supported domains. Note that you've to modify the rapl_msr()
function so that it invokes your program between the readings instead of just doing sleep(1)
. Otherwise, it'll just report the energy consumption in about a second with hardly any correlation of the energy consumption of your program.
rapl-read
doesn't currently support RKL (or any of the very recent Intel processors). But you can easily add RAPL support by first determining the CPU model from cat /proc/cpuinfo
and then adding a macro definition like #define CPU_ROCKETLAKE model
similar to the currently supported models. I see only two switch statements on the CPU mode, one in detect_cpu(void)
and one in rapl_msr(int core, int cpu_model)
. Just add a case for CPU_ROCKETLAKE
. RKL has the same RAPL domains as SKL, so place together with CPU_SKYLAKE
in both functions. That should do it. Or you can avoid rapl-read
altogether and just use wrmsr
and rdmsr
in a shell script that takes readings, runs the program, and then takes readings again.
MSR 0x611 is MSR_PKG_ENERGY_STATUS
, which reports a 32-bit unsigned value. The unit of this value is MSR_RAPL_POWER_UNIT
and the default is 15.26uj. You seem to think it's in micro-joules. Are you sure that this is what MSR_RAPL_POWER_UNIT
says? Even then, the result of the expression $(((end_energy - bgn_energy)/ujtoj))e-3
is in kilo-joules, so how are you comparing it with power/energy_pkg
on Zen3, which is clearly in joules?
If the correct unit is 15.26uj, then the measurement on the Intel processor would be 15.26*197000000 = 3,009,226,220,000 joules (about 3000 gigajoules). But since only the lowest 32 bits of the MSR register are valid, the maximum value is 15.26*(2^32 - 1) = 65,541,200,921.7 joules (about 65 gigajoules). So I think the unit is not 15.26uj.
It seems that the 500.perlbench
benchmark with the test
input took about 3 minutes to complete. It's hard to know whether MSR_PKG_ENERGY_STATUS
has wrapped around or not because the reported number is not negative.
I think it's better to run 500.perlbench
on one core and then run a script on another core that reads MSR_PKG_ENERGY_STATUS
every few seconds. For example, you can put rdmsr -d 0x611
in a loop and sleep for some number of seconds in each iteration. Since 500.perlbench
takes a relatively long time to complete, you don't have to start both programs at precisely the same time. In this way, you'd mimic the way perf stat -a -I 1000 -e power/energy-pkg/
works had the event power/energy-pkg/
been supported on your kernel on the Intel platform.
I've discussed the reliability of Intel's RAPL-based energy measurements at: perf power consumption measure: How does it work?. However, I don't know if anyone has validated the accuracy of AMD's RAPL. It's unclear to me to what extent a comparison between Intel's MSR_PKG_ENERGY_STATUS
and AMD's Core::X86::Msr::PKG_ENERGY_STAT
is meaningful.
QUESTION
library(mlr3verse)
preformace_msr <- msr("classif.fbeta", beta = 1.5)
I am trying to use custom value of BETA in fbeta measure for classification model tuning.
But the above way of trying to give beta value throws an error in mlr3.
What is the right way of doing it in mlr3?
...ANSWER
Answered 2021-Apr-03 at 20:46So the error was as follows:
QUESTION
I try to understand the difference between a graph and a graph learner. I can $train and $predict with a graph. But I need the "wrapper" in order to use row selection and scores (see code below).
Is there something that can be done with a graph that is not at the same time a learner? (In the code with gr
but not with glrn
?
ANSWER
Answered 2021-Apr-09 at 19:57A GraphLearner
always wraps a Graph
that takes a single Task
as input and produces a single Prediction
as output. A Graph
can, however, represent any kind of computation and can even take multiple inputs / produce multiple outputs. You would often use these as intermediate building blocks when building a Graph
that does training on a single task, giving a single prediction, which is then wrapped as a GraphLearner
.
In some cases this could also be helpful if you do some kind of preprocessing such as imputation or PCA that should also be applied to some kind of unseen data (i.e. apply the same rotation as PCA), even though your process as a whole is not classical machine learning producing a model for predictions:
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