tps | Temporal Pathway Synthesizer | 3D Animation library

 by   koksal Scala Version: v2.2 License: Non-SPDX

kandi X-RAY | tps Summary

kandi X-RAY | tps Summary

tps is a Scala library typically used in User Interface, 3D Animation, Tensorflow applications. tps has no bugs, it has no vulnerabilities and it has low support. However tps has a Non-SPDX License. You can download it from GitHub.

TPS outputs a Simple Interaction Format (SIF) file output.sif that summarizes the valid pathway models. The SIF file can be imported into Cytoscape to visualize the network. Each line has the form:.
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              tps has a low active ecosystem.
              It has 13 star(s) with 9 fork(s). There are 4 watchers for this library.
              OutlinedDot
              It had no major release in the last 12 months.
              There are 2 open issues and 1 have been closed. On average issues are closed in 13 days. There are 3 open pull requests and 0 closed requests.
              It has a neutral sentiment in the developer community.
              The latest version of tps is v2.2

            kandi-Quality Quality

              tps has no bugs reported.

            kandi-Security Security

              tps has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

            kandi-License License

              tps has a Non-SPDX License.
              Non-SPDX licenses can be open source with a non SPDX compliant license, or non open source licenses, and you need to review them closely before use.

            kandi-Reuse Reuse

              tps releases are available to install and integrate.
              Installation instructions, examples and code snippets are available.

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            tps Key Features

            No Key Features are available at this moment for tps.

            tps Examples and Code Snippets

            TPS: Temporal Pathway Synthesizer ,Output,Summary network
            Scaladot img1Lines of Code : 1dot img1License : Non-SPDX (NOASSERTION)
            copy iconCopy
            ProteinA  ProteinB
              

            Community Discussions

            QUESTION

            How to concatenate URL in an image src attribute?
            Asked 2021-Jun-09 at 12:56

            I'm trying to populate a table from an array of objects. The html is a simple table that get's populated from the following piece of code.

            The image that corresponds to each row has the same URL and is in the same folder ,however it has a different id (I simply call them 1.png, 2.png 3.png.... and so on ).

            Basically, I'm trying to construct each URL by concatenating the id. to the same URL over and over for each new row.

            All works well except the video part where the URL construction fails. Am I missing something here while concatenating the URL?

            ...

            ANSWER

            Answered 2021-Jun-09 at 12:56

            The line containing the img should be:

            Source https://stackoverflow.com/questions/67904470

            QUESTION

            Logstash grok patterns for message
            Asked 2021-Jun-01 at 13:38

            below is my log line:

            ...

            ANSWER

            Answered 2021-Jun-01 at 10:12

            By default, grok does not keep empty captures (cf. option: keep_empty_captures defaults to false).

            You can simply use :

            Source https://stackoverflow.com/questions/67785805

            QUESTION

            Python: Convert 2d list to dictionary with indexes as values
            Asked 2021-May-29 at 16:11

            I have a 2d list with arbitrary strings like this:

            ...

            ANSWER

            Answered 2021-May-29 at 16:11

            Maybe you could use two for-loops:

            Source https://stackoverflow.com/questions/67753126

            QUESTION

            RegEx JavaScript to replace equal sign followed by a new line
            Asked 2021-May-09 at 18:14

            I am attempting to craft a regex expression that will replace equal sign followed by a new line with nothing.

            Here is an example of the text. Notice each line ends with equals and a new line.

            ...

            ANSWER

            Answered 2021-May-09 at 15:58

            This will replace each = that is followed by a newline, but will not replace the new line character.

            Source https://stackoverflow.com/questions/67459630

            QUESTION

            How to change scene in Godot when all enemies are dead?
            Asked 2021-May-07 at 17:04

            I am new to Godot I was working around with TPS demo of Godot. I was trying to modify the enemy script so that when all enemies are dead it automatically takes to main menu. Here is what I did Initialized a variable

            ...

            ANSWER

            Answered 2021-May-07 at 17:04

            GDScript has no static (a.k.a shared) variables. And thus, you have an instance of the variable per enemy. If anything, the variable only ever gets to 1, because the enemy it is on can only die once.

            Instead, add signals on the enemies. Signals they can emit when they die. See Custom signals.

            For example:

            Source https://stackoverflow.com/questions/67437430

            QUESTION

            php concatenation is adding extra space at the end of the string
            Asked 2021-Apr-30 at 18:23

            I am trying to create a function in php with the purpose of outputting a URL wrapped in quotation marks " ".

            I am concatenating an existing URL with a variable but php is adding an extra space at the end of the first string before concatenating.

            Troubleshooting:

            I already tried str_replace() and rtrim() but no success.

            I tried the instructions at Why does fgets adds a space at the end of string? and it does generate the last blank space like so

            ...

            ANSWER

            Answered 2021-Apr-30 at 18:15

            You need to trim before you concatenate the quotes.

            Source https://stackoverflow.com/questions/67338581

            QUESTION

            Microsoft Identity Framework assigning roles to user error with Postgres Database - The CancellationTokenSource has been disposed
            Asked 2021-Apr-28 at 06:53

            Hi I am having issues with assigning roles to users with Identity Framework 5.0.5, .net5.0.5 and a Postgres SQL db.

            The code used to assign the roles to users can be seen below with the error below it.

            Please help if possible.

            Thanks so much!

            ...

            ANSWER

            Answered 2021-Apr-28 at 06:53

            Please try changing it to not use the await methods like below

            Source https://stackoverflow.com/questions/67268637

            QUESTION

            Chronicle queue POC returned unexpected latency
            Asked 2021-Apr-20 at 01:55

            One of our system has a micro service architecture using Apache Kafka as a service bus. Low latency is a very important factor but reliability and consistency (exactly once) are even more important.

            When we perform some load tests we noticed signifiant performance degradation and all investigations pointed to big increases in Kafka topics producer and consumer latencies. No matter how much configuration we changed or more resources we added we could not get rid of the symptoms.

            At the moment our needs are processing 10 transactions per second (TPS) and the load test is exercising 20 TPS but as the system is evolving and adding more functionality we know we'll reach a stage when the need will be 500TPS so we started being worried if we can achieve this with Kafka.

            As a proof of concept I tried to switch to one of our micro services to use a chronicle-queue instead of a Kafka topic. It was easy to migrate following the avro example as from Chronicle-Queue-Demo git hub repo

            ...

            ANSWER

            Answered 2021-Apr-20 at 01:55

            Hand building the Avro object each time seems a bit of a code smell to me.

            Can you create a predefined message -> avro serializer and use that to feed the queue?

            Or, just for testing, create one avro object outside the loop and feed that one object into the queue many times. That way you can see if it is the building or the queuing which is the bottleneck.

            More general advice:

            Maybe attach a profiler and see if you are making an excessive amount of object allocations. Which is particularly bad if they are getting promoted to higher generations.

            See if they are your objects or Chronicle Queue ones.

            Is your code maxing out your ram or cpu (or network)?

            Source https://stackoverflow.com/questions/67133050

            QUESTION

            Why does RateLimiter allow only 1 transaction for a rate limit of 2 TPS?
            Asked 2021-Apr-07 at 05:19

            RateLimiter configured for a rate of 2 TPS only allows 1st request and throttles 2nd Request.

            ...

            ANSWER

            Answered 2021-Apr-07 at 05:19
            Smooth distribution
            A RateLimiter is defined primarily by the rate at which permits are issued. Absent additional configuration, permits will be distributed at a fixed rate, defined in terms of permits per second. Permits will be distributed smoothly, with the delay between individual permits being adjusted to ensure that the configured rate is maintained.
            It is possible to configure a RateLimiter to have a warmup period during which time the permits issued each second steadily increases until it hits the stable rate.

            Ref: Rate Limiter

            The configured rate is distributed evenly across the interval. (more like a sliding window)

            Source https://stackoverflow.com/questions/66979840

            QUESTION

            Problem setting up node js server to listen for webhook and post to database
            Asked 2021-Apr-04 at 20:50

            Good morning everyone, I'm having a bit of a struggle setting up a server to listen for webhook data and post it to a database. I'm mostly front-end, so some of this is a bit new for me. So I have a deli website that i built on snipcart. I have a receipt printer that queries an api and prints out new orders. So what I'm wanting is a server to listen for the webhook and store the info in a database. I've got it where it listens for the webhook correctly, but it refuses to post to the database. Here's the code in the app.js file.

            ...

            ANSWER

            Answered 2021-Apr-04 at 20:50

            Snipcart will send the webhook to you endpoint for different events. I would suggest you to first filter the event by eventName, because you want to listen for only the order.completed event. After that from the body of the request message, you can extract the items that will be in the req.body.content.items. You can take from the available info what you want and store only that in the database.

            Try this:

            Source https://stackoverflow.com/questions/66853946

            Community Discussions, Code Snippets contain sources that include Stack Exchange Network

            Vulnerabilities

            No vulnerabilities reported

            Install tps

            TPS is built and run using the command-line interface. To use TPS, follow these steps:.
            Download the code: git clone https://github.com/koksal/tps.git
            Browse to the root project folder: cd tps
            Invoke ./scripts/run. The first time this script is run, it will download sbt-extras, which is a script for running the build tool sbt. After sbt is downloaded, the script will build the code and run TPS with the given command-line arguments. To run TPS using the provided data, copy and paste the following command into the terminal: ./scripts/run \ --network data/networks/input-network.tsv \ --timeseries data/timeseries/median-time-series.tsv \ --firstscores data/timeseries/p-values-first.tsv \ --prevscores data/timeseries/p-values-prev.tsv \ --partialmodel data/resources/kinase-substrate-interactions.sif \ --peptidemap data/timeseries/peptide-mapping.tsv \ --source EGF_HUMAN \ --threshold 0.01 This command will generate, in the current folder: a network file named output.sif a tab-separated file named activity-windows.tsv The output files are described in the Output section.

            Support

            For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .
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            https://github.com/koksal/tps.git

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            gh repo clone koksal/tps

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            git@github.com:koksal/tps.git

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