easybuild | EasyBuild - building software with ease | Performance Testing library

by easybuilders Shell Version: easybuild-v4.7.1 License: GPL-2.0

X-Ray Key Features Code Snippets Community Discussions(6)Vulnerabilities Install Support

kandi X-RAY | easybuild Summary

easybuild is a Shell library typically used in Testing, Performance Testing applications. easybuild has no bugs, it has no vulnerabilities, it has a Strong Copyleft License and it has low support. You can download it from GitHub.

EasyBuild - building software with ease

Support

Quality

Security

License

Reuse

Support

easybuild has a low active ecosystem.

It has 405 star(s) with 140 fork(s). There are 34 watchers for this library.

It had no major release in the last 12 months.

There are 87 open issues and 167 have been closed. On average issues are closed in 80 days. There are 12 open pull requests and 0 closed requests.

It has a neutral sentiment in the developer community.

The latest version of easybuild is easybuild-v4.7.1

Quality

easybuild has no bugs reported.

Security

easybuild has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

License

easybuild is licensed under the GPL-2.0 License. This license is Strong Copyleft.

Strong Copyleft licenses enforce sharing, and you can use them when creating open source projects.

Reuse

easybuild releases are available to install and integrate.

Top functions reviewed by kandi - BETA

kandi's functional review helps you automatically verify the functionalities of the libraries and avoid rework.
Currently covering the most popular Java, JavaScript and Python libraries. See a Sample of easybuild

Get all kandi verified functions for this library.

easybuild Key Features

No Key Features are available at this moment for easybuild.

easybuild Examples and Code Snippets

No Code Snippets are available at this moment for easybuild.

Community Discussions

Trending Discussions on easybuild

"Error: No such file or directory" for input that has to be generated first

How to add default script to run inside a singularity container?

"AttributeError: 'DataFrame' object has no attribute 'dtype'" using pandas to_datetime

unicode argument expected, got 'str'

How broadcast a huge rdd in pyspark?

Statsmodels (Patsy) illegal variable name / 'Series' object is not callable Error

QUESTION

"Error: No such file or directory" for input that has to be generated first

Asked 2020-Nov-24 at 12:58

I have two rules for STAR, STAR_genome does some indexing for the STAR rule, therefore the input of STAR is the direct output from STAR_genome - so far so simple. But when I try to run this, the STAR_genome rule is ignored (not listed in job count) and I get the following exception:

FileNotFoundError: [Errno 2] No such file or directory: '[...]STAR/cauliflower/genome/genome.ok'

I don't understand why snakemake would ignore the generating rule and just complain about a missing file instead, as it even takes the path from the very rule that should generate it...

...

ANSWER

Answered 2020-Nov-24 at 12:58

with the help of command snakemake --debug-dag I found that I had an error in the config call at

Source https://stackoverflow.com/questions/64986357

QUESTION

How to add default script to run inside a singularity container?

Asked 2020-Mar-03 at 08:30

I am trying to build a singularity container based on a pre-built anaconda2 image isuch as:

...

ANSWER

Answered 2020-Mar-03 at 08:30

You can only add/edit the default run options if you are using a Singularity definition file. I recommend this option for reproducibility, but it's not strictly required in this case.

Assuming you followed the install instructions from github, you created a new conda environment for the package. The issue is because that conda environment not being the default environment. You can, instead, install the packages into the base/default conda environment and it will then be available to singularity exec.

Source https://stackoverflow.com/questions/60456027

QUESTION

"AttributeError: 'DataFrame' object has no attribute 'dtype'" using pandas to_datetime

Asked 2020-Feb-15 at 09:39

I have been using Python 2.7.13 on a windows machine to write my code. But I am now trying to run my code on a unix cluster using Python 2.7.12-goolf-2015a.
When I run my code on the cluster with 2.7.12, I encounter an error in the pandas function to_datetime which does not occur using 2.7.13.

The error occurs when I try to convert a date entries in a dataframe to datetime.

Here is an example ot the error I get with the to_datetime command

...

ANSWER

Answered 2017-Sep-15 at 03:23

Try joining the columns and then applying pd.to_datetime.

Source https://stackoverflow.com/questions/46231003

QUESTION

unicode argument expected, got 'str'

Asked 2020-Jan-06 at 10:24

I'm using python 2.7.12. Running pd.__version__ returns u'0.19.0'.

I'm using a module called dalmatian. For one of the functions, once I run verbatim what is provided in the documentation, I get the error:

wm.update_participant_set('all_participants', participant_df.index)
TypeError: unicode argument expected, got 'str'

I have an inkling suspicion that this might be due to the version of pandas or python that I'm using. Running participant_df.index returns:

...

ANSWER

Answered 2020-Jan-06 at 10:24

I facced same error, the code was written in python 3, but i was running it with python 2. so swiching to python 3 worked for me.

Source https://stackoverflow.com/questions/53770583

QUESTION

How broadcast a huge rdd in pyspark?

Asked 2019-Feb-26 at 14:30

When I print out the first element of my rdd as following:

...

ANSWER

Answered 2019-Feb-25 at 06:30

If your RDD is too large, the application might run into a OutOfMemory error,which cause by the collect method pull all the data the driver's memory which usually isn't large enough.

So you can try to incease your driver's memory by

Source https://stackoverflow.com/questions/54859297

QUESTION

Statsmodels (Patsy) illegal variable name / 'Series' object is not callable Error

Asked 2018-Jul-27 at 11:14

Update:

The error might have been caused by the fact that there is also a variable named "Q" in my dataset which conflicts the Q function. In this case, how do I elegantly solve it?

Update: You can download my dataset here.

I am running a simple OLS regression with statsmodels and pandas dataframe as following:

...

ANSWER

Answered 2018-Jul-27 at 07:06

According to this link: http://patsy.readthedocs.io/en/latest/builtins-reference.html#patsy.builtins.Q you can use Q("var") in the formula to get rid of the error.

The following code should work.

Source https://stackoverflow.com/questions/51548666

Community Discussions, Code Snippets contain sources that include Stack Exchange Network

Vulnerabilities

No vulnerabilities reported

Install easybuild

You can download it from GitHub.

Support

For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .

Find more information at: