Spectral-Clustering | Spectral Clustering in C | Machine Learning library
kandi X-RAY | Spectral-Clustering Summary
kandi X-RAY | Spectral-Clustering Summary
This is a preliminary version of spectral clustering in C++. The idea is to create a weighted graph from the given datapoints, where the weight between two points is given by some similarity function. We then use properties of the eigenvectors of the graph's Laplacian to compute points that represent the data well, later to use k-means clustering on this.
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QUESTION
I'm running spectral coclustering on this dataset of Jeopardy questions, and there is this frustrating issue I'm facing with the data. Note that I'm only clustering all the values in the 'question' column.
There is apparently a "divide by zero" ValueError occurring when I run biclustering on the dataset.
...ANSWER
Answered 2018-Nov-19 at 01:13Some strings sequence like e.g. 'down out' results in a zero return value from TfidfVectorizer()
. That causes the errors starting with a divide by zero error, which results in inf
values in the mtx
sparse matrix
and this causes the second error.
As a workaround to this problem to remove this sequences or remove the zero matrix elements from the mtx
matrix after it created by TfidfVectorizer.fit_transform()
, which a bit tricky because of the sparse matrix operation.
I made the second solution, as I didn't dived into the original tasks, as follows:
QUESTION
I'd like to cluster a graph in python using spectral clustering.
Spectral clustering is a more general technique which can be applied not only to graphs, but also images, or any sort of data, however, it's considered an exceptional graph clustering technique. Sadly, I can't find examples of spectral clustering graphs in python online.
Scikit Learn has two spectral clustering methods documented: SpectralClustering and spectral_clustering which seem like they're not aliases.
Both of those methods mention that they could be used on graphs, but do not offer specific instructions. Neither does the user guide. I've asked for such an example from the developers, but they're overworked and haven't gotten to it.
A good network to document this against is the Karate Club Network. It's included as a method in networkx.
I'd love some direction in how to go about this. If someone can help me figure it out, I can add the documentation to scikit learn.
Notes: ...ANSWER
Answered 2017-Sep-16 at 22:44Without much experience with Spectral-clustering and just going by the docs (skip to the end for the results!):
Code:QUESTION
I am using the code from https://github.com/pin3da/spectral-clustering/blob/master/spectral/utils.py to spectrally cluster data in https://cs.joensuu.fi/sipu/datasets/s1.txt
May i know how I can change the code such that it can take in txt file as input? I have given the original code below for reference
Original code from GitHub
...ANSWER
Answered 2018-Jun-14 at 06:32The code you show here just opens a given mat
or h5
file. The path to the file (path
) and the name of the data set within the file (db_name
) are provided as arguments to the load_dot_mat
function.
To load your txt file, we can create our own little load function:
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