TEMP2 | detect germline and de novo transposon insertions | Machine Learning library

by weng-lab Shell Version: Current License: GPL-3.0

X-Ray Key Features Code Snippets Community Discussions(10)Vulnerabilities Install Support

kandi X-RAY | TEMP2 Summary

TEMP2 is a Shell library typically used in Artificial Intelligence, Machine Learning, Deep Learning applications. TEMP2 has no bugs, it has no vulnerabilities, it has a Strong Copyleft License and it has low support. You can download it from GitHub.

TEMP2 is an algorithm for detecting transposon insertions using short-read whole-genome sequencing data. It can not only precisely detect germline transposon insertions, but also estimate the number of uninherited/somatic transposon insertions by removing artificial insertion introduced by chimeric reads. If you use TEMP2 for transposon insertion detection, please cite: Yu et al. A benchmark and an algorithm for detecting germline transposon insertions and measuring de novo transposon insertion frequencies. Nucleic Acid Research. 2021. Author: Tianxiong Yu (yutianxiong@gmail.com) in Weng Lab If you have any questions or find any bugs please contact Tianxiong Yu through yutianxiong@gmail.com.

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Support

TEMP2 has a low active ecosystem.

It has 14 star(s) with 2 fork(s). There are 5 watchers for this library.

It had no major release in the last 6 months.

There are 1 open issues and 2 have been closed. On average issues are closed in 31 days. There are no pull requests.

It has a neutral sentiment in the developer community.

The latest version of TEMP2 is current.

Quality

TEMP2 has no bugs reported.

Security

TEMP2 has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

License

TEMP2 is licensed under the GPL-3.0 License. This license is Strong Copyleft.

Strong Copyleft licenses enforce sharing, and you can use them when creating open source projects.

Reuse

TEMP2 releases are not available. You will need to build from source code and install.

Installation instructions, examples and code snippets are available.

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TEMP2 Key Features

No Key Features are available at this moment for TEMP2.

TEMP2 Examples and Code Snippets

No Code Snippets are available at this moment for TEMP2.

Community Discussions

Trending Discussions on TEMP2

How do a sort a array of void* that points to places with names?

I created an empty list. Take words from the user. Give the total number of words greater then 5

Finding ratio of 2 numbers in C++

Cannot figure out how to combine arrays to be able to write to SQL columns in powershell

can I run multiple DataFrames and apply a function to each list?

How can I append values from one df to the bottom of a column in my second in one expression?

How to import data from custom template tag to javascript? Django

React Native pod install failed on Apple Silicon (M1)

Sort all the elements of the list according to the first letter, irrespective of their cases . Do not use any inbuilt sorting function

Node-red: function node to send a local image to Azure with Analyze Image API

QUESTION

How do a sort a array of void* that points to places with names?

Asked 2021-Jun-15 at 02:51

Basically there are rectangles (buildings) and circles (people).

The task I need to do is basically, when a function "fg" is called, every circle that is inside a given radius needs to run to the closest rectangle, and after all the circles inside the radius finds a rectangle, I need to report on a .txt file the names of the circles that run to each rectangle sorted alphabetically.

Such as:

Rectangle A: c1 c2 c3

Rectangle B: c7 c11 c20

...

And so on...

I need to store the addresses of the circles that run, on a vector of each rectangle. I tried to use qsort from stdlib.h, but maybe the function that i use to compare is wrong

(EDIT - full code to better understand):

...

ANSWER

Answered 2021-Jun-15 at 02:51

The third parameter needs to be the size of the actual array elements:

Source https://stackoverflow.com/questions/67979249

QUESTION

I created an empty list. Take words from the user. Give the total number of words greater then 5

Asked 2021-Jun-09 at 13:24

Any mistake is there?

...

ANSWER

Answered 2021-Jun-09 at 13:24

Here is the corrected version:

Source https://stackoverflow.com/questions/67903848

QUESTION

Finding ratio of 2 numbers in C++

Asked 2021-Jun-07 at 06:02

I'm currently learning C++ using PPP by Bjarne Stroustrup. There is a Practice question:

Write a program that prompts the user to enter two integer values. Store these values in int variables named val1 and val2. Write your program to determine the smaller, larger, sum, difference, product, and ratio of these values and report them to the user.

For ratio I want it to be like The ratio of 500 and 700 is 5:7. I known the answer of this could be

...

ANSWER

Answered 2021-Jun-06 at 09:36

You are working with the wrong algorithm: in order to find the ratio between two numbers a and b, you are doing:

Source https://stackoverflow.com/questions/67857370

QUESTION

Cannot figure out how to combine arrays to be able to write to SQL columns in powershell

Asked 2021-Jun-04 at 03:40

I have been struggling with this for hours without any result :(. I have a select string command which finds various strings in the files

...

ANSWER

Answered 2021-Jun-04 at 03:40

This should do, I'm just not sure of what the source type object types are for the variables holding the values.

Source https://stackoverflow.com/questions/67797582

QUESTION

can I run multiple DataFrames and apply a function to each list?

Asked 2021-Jun-03 at 17:49

i got 18 merged lists

...

ANSWER

Answered 2021-Jun-03 at 17:49

Put your dataframes temp1, temp2, etc. and temp1_t, temp2_t into separate lists. Do this when you originally create the dataframes, not after they are already separate df's. So they would look like:

Source https://stackoverflow.com/questions/67825898

QUESTION

How can I append values from one df to the bottom of a column in my second in one expression?

Asked 2021-Jun-03 at 13:59

I'm trying to append a list of values ('A') from a separate df to the bottom of my output (finalDf) where the values are always the same and don't need to be in order.

Heres what i have tried so far:

...

ANSWER

Answered 2021-Jun-03 at 13:59

This can be done with the concat function along axis=0 i.e. it will join the data frames provided along rows. In layman terms, it will join the 2nd data frame below the 1st. Keep in mind that the number of columns should be the same in both the data frames.

Source https://stackoverflow.com/questions/67822680

QUESTION

How to import data from custom template tag to javascript? Django

Asked 2021-Jun-01 at 08:15

How to escape js on a custom template tag?

In my custom_tags.py I have registered a simple tag which simply takes data from firebase in form of array of dictionary. I want to pass this array directly to my JavaScript but doing so gives me error.

my custom_tags.py -

...

ANSWER

Answered 2021-Jun-01 at 08:15

One thing you can try is convert all to the string and then use javascript replaceAll() to convert quot to double inverted commas.

Something like

Source https://stackoverflow.com/questions/67784884

QUESTION

React Native pod install failed on Apple Silicon (M1)

Asked 2021-May-27 at 13:38

I got my new Macbook Pro which has M1 chip.

I tried to run my react native project but stucked on pod install.

After that, I created an empty project and tried on that still getting the same error.

...

ANSWER

Answered 2021-Jan-31 at 18:25

I realized that homebrew installation messed up cocoapods.

Simply, I uninstalled homebrew and start from beginning. Then it worked.

Source https://stackoverflow.com/questions/65917288

QUESTION

Sort all the elements of the list according to the first letter, irrespective of their cases . Do not use any inbuilt sorting function

Asked 2021-May-27 at 09:46

I am trying to sort the below languages list but not getting the desired output. Not sure why this is happening. I am new to the python programming.

...

ANSWER

Answered 2021-May-27 at 08:51

Use Bubble sort on first letter:

Source https://stackoverflow.com/questions/67718457

QUESTION

Node-red: function node to send a local image to Azure with Analyze Image API

Asked 2021-May-25 at 11:07

I want to send a local image file to Azure cognitive service with Analyze Image API for image recognition in node-red. This is my nodes:

The code in function node is :

...

ANSWER

Answered 2021-May-25 at 11:07

You can't just pass the filename as the data field. The HTTP-request node will just send that string, it will not load the content of the file from disk.

You will need to use a file node to load the content of the image then build a properly formatted payload object. Here is an example:

Source https://stackoverflow.com/questions/67685283

Community Discussions, Code Snippets contain sources that include Stack Exchange Network

Vulnerabilities

No vulnerabilities reported

Install TEMP2

With [git](https://git-scm.com/downloads) installed, simply type the following command to install TEMP2:. To avoid mixing the pre-compiled tools with your own versions, we do not recommend to add /TEMP2/bin to the $PATH.

Support

For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .

Find more information at: