pathways | Camino : mCODE-based Oncology Clinical Pathways | Frontend Framework library

background first: I have the following agent types: activity and pathway. pathways are agents that contain populations of activities. activities contain specific instructions given to other agents (orders). And pathways are collections of those instructions. The pathway collections are defined via a database where each row is 1 pathway agent & each column is the String ID of an activity, with the cell value being 0, 1, 2 etc depending on number of each activity allocated to that pathway.

Goal: I need to create a population of activities within the pathway agent at agent startup

What I have tried: I have created a population of activities in Main. Each pathway has an activityList which contains the string ID of all the activities. The intention is when a cell value is 1 or above, the code would pick the corresponding activity agent from main and place it into the population in pathway. Code below, I noticed from other posts an index is used to go through rows, but this does not seem to work for columns.

Problem: I cannot get the code to search the columns dynamically, based on the list of string IDs

I have a heatmap where the text for the y-axis keeps getting cut off. The text gets cut off whether I try to save the image manually in RStudio export, or using:

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Here is my code with some attempt to fill in the logic using psudo, these areas have Asterix around them:

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I thought maybe it had something to do with listeners, blocking or too many unfinished calls, and I thought I could maybe find answers with features of dev tools like memory and event listener but these didn't help me. I noted that the input box option also used a similar event listener so I thought there could be an interaction somehow, so I changed it to a keyup listener and still go the same effects.

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The error:

I am trying to create a ggplot from a list column. First I create the list column and then the ggplot. The intended ggplot is a ggupset to show set intersections. I followed the ggupset example to create the list column and plot. However, I get the following warning when trying to create a geom_bar() from the list column: Warning message: Computation failed in stat_count():non-numeric argument to mathematical function. I am also unable to reproduce the ggupset example using tidy_pathway_member. Below is a simple reprex as well as the ggupset example.

Thank you for your time and help!