tabix | Open source simple business intelligence application | Business library

 by   tabixio TypeScript Version: 22.05.17 License: Non-SPDX

kandi X-RAY | tabix Summary

kandi X-RAY | tabix Summary

tabix is a TypeScript library typically used in Web Site, Business applications. tabix has no bugs, it has no vulnerabilities and it has medium support. However tabix has a Non-SPDX License. You can download it from GitHub.

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            kandi-support Support

              tabix has a medium active ecosystem.
              It has 1891 star(s) with 238 fork(s). There are 47 watchers for this library.
              OutlinedDot
              It had no major release in the last 12 months.
              There are 33 open issues and 119 have been closed. On average issues are closed in 1024 days. There are no pull requests.
              It has a neutral sentiment in the developer community.
              The latest version of tabix is 22.05.17

            kandi-Quality Quality

              tabix has 0 bugs and 0 code smells.

            kandi-Security Security

              tabix has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.
              tabix code analysis shows 0 unresolved vulnerabilities.
              There are 0 security hotspots that need review.

            kandi-License License

              tabix has a Non-SPDX License.
              Non-SPDX licenses can be open source with a non SPDX compliant license, or non open source licenses, and you need to review them closely before use.

            kandi-Reuse Reuse

              tabix releases are available to install and integrate.
              Installation instructions are available. Examples and code snippets are not available.
              tabix saves you 1252 person hours of effort in developing the same functionality from scratch.
              It has 2815 lines of code, 0 functions and 138 files.
              It has low code complexity. Code complexity directly impacts maintainability of the code.

            Top functions reviewed by kandi - BETA

            kandi has reviewed tabix and discovered the below as its top functions. This is intended to give you an instant insight into tabix implemented functionality, and help decide if they suit your requirements.
            • Overlay the content of a page
            • Get all available hooks available .
            • Listen for textdown events .
            • Checks if the selection is multi - selection
            • Dummy cell
            • lookup for prototype
            • Sets a new S .
            • Abstract function implementation .
            • Gets the column header height of the column .
            • if value is not defined
            Get all kandi verified functions for this library.

            tabix Key Features

            No Key Features are available at this moment for tabix.

            tabix Examples and Code Snippets

            No Code Snippets are available at this moment for tabix.

            Community Discussions

            QUESTION

            Concatenate values in ST Transformation?
            Asked 2020-Dec-21 at 18:32

            I am writing a serialization through ST and it should put several vars/nodes into one XML tag.

            Input ABAP itab that should be serialized:

            ...

            ANSWER

            Answered 2020-Jul-13 at 19:04

            If you have schema (xsd) file, you can convert it to wsdl with report SPROX_XSD2WSDL then create service consumer with it. You can use below code to use this service consumer for getting xml from auto generated trasform (Also you can check this transform for getting hint for your solution).

            Source https://stackoverflow.com/questions/62880823

            QUESTION

            Docker container's sshfs mount freezes, but only when mounted by Python
            Asked 2020-Dec-17 at 06:35

            I have a development laptop (Mint 19.3), and a test server (Ubuntu 18.04.4 LTS).

            The laptop is Docker version 19.03.5, build 633a0ea838, the server is Docker version 19.03.12, build 48a66213fe

            I'm running Python 3.6 code inside the container, which uses subprocess (code below) to create an sshfs mount to a third server, after which the python code walks through the mounted directory.

            Everything works fine on my development laptop. But on the server, the directory mounts (and is seen with the mount command) however cd'ing into the directory just hangs, and the Python code's subsequent walk just hangs. (NOTE: The python code never crashes or errors out. It just hangs forever.)

            HOWEVER, if I manually use the same sshfs command at the container's command line, the directory works fine.

            I'm at a loss as to how to troubleshoot this.

            ===2020-09-25 UPDATE===

            OK. Since the Python code uses subprocess, the sshfs mount is obviously available to any terminal windows that wants to use it.

            I have tried accessing the mount from a new terminal window inside the container, but when I cd to the mount - the window just freezes.

            Well, I left everything sitting overnight - and now when I try to cd into the mount ... it works. It's like the mount has to sit for hours before it will work.

            Any ideas?

            Python code

            ...

            ANSWER

            Answered 2020-Dec-13 at 10:51

            I am assuming you want to mount some server's directory to container's filesystem using SSHFS. You could add that instruction to the Dockerfile:

            Source https://stackoverflow.com/questions/64049240

            QUESTION

            How to most efficiently retrieve data from NarrowPeak (BED6+4) format files?
            Asked 2020-Oct-12 at 17:08

            I am working on a bioinformatics project that involves very big NarrowPeak formated files that look like this:

            (the columns are 'chrom ,chromStart, chromEnd, name, score ,strand, signalValue ,pValue, qValue ,peak')

            ...

            ANSWER

            Answered 2020-Oct-12 at 17:08

            Pandas is serious overkill. If you are using tabix for your querying too, with a command sequence like:

            Source https://stackoverflow.com/questions/64292414

            QUESTION

            How to use Snakemake container for htslib (bgzip + tabix)
            Asked 2020-Sep-24 at 21:01

            I have a pipeline which uses a global singularity image and rule-based conda wrappers.

            However, some of the tools don't have wrappers (i.e. htslib's bgzip and tabix).

            Now I need to learn how to run jobs in containers.

            In the official documentation link it says:

            "Allowed image urls entail everything supported by singularity (e.g., shub:// and docker://)."

            Now I've tried the following image from singularity hub but I get an error:

            minimal reproducible example: config.yaml ...

            ANSWER

            Answered 2020-Sep-24 at 17:38

            Using another container solves the issue; however, the fact I'm getting errors from biocontainers is troubling given that these are both very common and used as examples in the literature so I will award the top-answer to whomever can solve that specific issue.

            As it were, the use of stackleader/bgzip-utility solve the issue of actually running this rule in a container.

            Source https://stackoverflow.com/questions/64050974

            QUESTION

            Wildcard within wildcard in Snakemake
            Asked 2020-Jun-12 at 09:08

            I have very recently started using Snakemake.

            What I am trying to achieve is this: I have some samples which need to be modified, independently (rule index_vcf). Then, groups of samples are the input of another rule (analyse), and we get an output for each group in groups.

            I would like the second rule to run two commands:

            ...

            ANSWER

            Answered 2020-Jun-11 at 18:31

            Firstly you need to correct misprints (e.g. there is a string that has no closeing quote). Next, there is a logical error in that no rule produces anything that matches the pattern "../out/{group}.out". Did you mean "../data/{group}.out"?

            Now the main part. This is an invalid syntax:

            Source https://stackoverflow.com/questions/62328246

            QUESTION

            awk print 4 columns and a substring of $8
            Asked 2019-Nov-21 at 14:47

            I have a file in VCF format with several info in 8th column:

            ...

            ANSWER

            Answered 2019-Nov-21 at 14:47

            Could you please try following.

            Source https://stackoverflow.com/questions/58975157

            QUESTION

            Using FOR with a dynamic internal table
            Asked 2019-Sep-26 at 21:38

            I would like to convert the method below to a nested FOR instead of a nested LOOP, but I don't know how to do it since the inner table is dynamic (it can be one of 5 different types).

            ...

            ANSWER

            Answered 2019-Sep-25 at 16:00

            My answer was checked for ABAP 7.52. Unfortunately, it's currently only possible to use a subset of the static variant of ASSIGN by using LET = writable_expression IN inside a construction expression (including "FOR" table iterations), where the "writable expression" is limited to a table expression, NEW and CAST. So it's rather limited, there are no equivalences for the dynamic variants of ASSIGN, so you can use only workarounds.

            The syntax after WHERE allows a dynamic expression, so it will be possible to enter WHERE ('LGART = KNOWN_LINE-LGART'). However, it could be very counter-performing if the loop is nested inside another loop (as it is in your case), so an index should be defined so that to accelerate the iteration. If a secondary index is to be used, then the condition should be USING KEY ('KEYNAME') WHERE ('LGART = KNOWN_LINE-LGART').

            Now, here is a workaround for your particular case: you define statically the names of the components, so one possibility is to define a static structure with those component names and use the CORRESPONDING construction operator. Note that I didn't test it, but I think for several reasons that the performance of using CORRESPONDING is faster in your case than using ASSIGN.

            The following code should work. I assume that the internal table behind has a primary key sorted by LGART (TYPE SORTED TABLE OF ... WITH NON-UNIQUE KEY lgart) so that the performance is good:

            Source https://stackoverflow.com/questions/58089169

            QUESTION

            ChildIOException when trying to make directories for workflow [Snakemake]
            Asked 2019-Sep-08 at 10:15

            I'm trying to make a simple way to create all of the sub-directories needed for the workflow in one rule. However, I'm getting a ChildIOException which makes no sense to me whenever I try to execute a rule that creates all of the required directories at the top of the workflow:

            ...

            ANSWER

            Answered 2019-Sep-08 at 10:15

            I see three options;

            • Just to do mkdir -p in the vcf_split1_23 rule. (this doesn't fail when the dir already exists) .
            • Make the directories with python outside of any rule; e.g. os.mkdir("filtered_vcf").
            • Instead of specifying the directories you want to make as output, specify them as params:

            Source https://stackoverflow.com/questions/57828210

            QUESTION

            Program hangs when trying to open a connection to ClickhouseDB?
            Asked 2019-Aug-27 at 10:31

            I am trying to connect to a local ClickhouseDB from my application to execute some raw queries. The problem arises when I try to open the connection. It never returns from the method call.

            The ClickhouseDB is started within a docker container.

            ...

            ANSWER

            Answered 2019-Aug-14 at 15:12

            It looks like the connection string that you are using is not correct.

            Take out the "port" key and append the port number to the server (which you have named 'host' right now) key like so:

            "Server=127.0.0.1,8123;User=default;Password=;Database=default;Compress=True;CheckCompressedHash=False;SocketTimeout=60000000;Compressor=lz4"

            Thanks, Gary

            Source https://stackoverflow.com/questions/57496295

            QUESTION

            Snakemake - How do I use each line of a file as an input?
            Asked 2019-Aug-21 at 19:26

            I need to use each line of the file tissuesused.txt as an input for a parallelized rule in snakemake. I think there are about 48 jobs I would like to call in total.

            ...

            ANSWER

            Answered 2019-Aug-21 at 19:26

            I think what you are looking for are checkpoints in Snakemake. Take a look at this example:

            Source https://stackoverflow.com/questions/57596812

            Community Discussions, Code Snippets contain sources that include Stack Exchange Network

            Vulnerabilities

            No vulnerabilities reported

            Install tabix

            Not need, open in browser http://ui.tabix.io/. Alpha version : http://alpha.tabix.io.

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