Pathway Enrichment-Guided Activity Study of Alternative Splicing (PEGASAS)
Support
Quality
Security
License
Reuse
2
2019WAIC-hackthon-Garbage-Classificationby 17Skye17
Python 
12 Version:Current
License: No License (No License)
License: No License (No License)1st Place Solution to 2019WAIC hackthon Garbage Classification Challenge
Support
Quality
Security
License
Reuse
Desktop tool for microbial genome annotation and gene detection
Support
Quality
Security
License
Reuse
M
Medical-Healthcare-3D-Imaging-AIby DeepHiveMind
Python 12 Version:Current License: Permissive (BSD-3-Clause)
:hospital: :eye_speech_bubble: Medical Healthcare AI | Robotic Surgery | Automated Brain Tumour Segmentation | Skin Cancer Lesion Detection & Segmentation (Melonama Recognition) | Lung Cancer detection (Chest CT Scan) | IMAGE SEGMENTATION TECHNIQUES
Support
Quality
Security
License
Reuse
A suite of javascript apps for visualizing sequencing data
Support
Quality
Security
License
Reuse
C
CoECI-CMS-Healthcare-Fraud-Preventionby NASA-Tournament-Lab
JavaScript 12 Version:Current License: Permissive (Apache-2.0)
The Healthcare Fraud Prevention Partnership (HFPP) through United States Centers for Medicare & Medicaid Services (CMS) in collaboration with NASA’s Center of Excellence for Collaboration (CoECI), Harvard, and TopCoder developed software that supports a data exchange network that enables healthcare insurance-paying entities in both the public and private sector to safely and securely share information for purposes of prevention and detection of fraud, waste and abuse across partners.
Support
Quality
Security
License
Reuse
Healint is a way to assist doctors and patients in disease diagnosis and their treatment. It has a doctor bot which interacts with patients and finally predict the disease. Other than this it also has location based hospital recommendation system. It also facilitates in knowing your BMI and getting a diet chart
Support
Quality
Security
License
Reuse
Lollipop-diagram to visualize genomic mutations
Support
Quality
Security
License
Reuse
GraphQL based Resource Server based on HL7 FHIR version R4
Support
Quality
Security
License
Reuse
Covid 19 api
Support
Quality
Security
License
Reuse
The platform for verified medical speakers and their recommendations.
Support
Quality
Security
License
Reuse
Code for the paper Uncertainty Quantification using Variational Inference for Biomedical Image Segmentation
Support
Quality
Security
License
Reuse
Over 80 Symfony Code Snippets for PhP code And Over 80 Twig Code Snippets. Just type the letters 'sf' to get a list of all available Symfony Code Snippets. For Twig Just Type the Tag name and you will get AutoCompletion.
Support
Quality
Security
License
Reuse
Free Open Source Components for Xamarin Forms
Support
Quality
Security
License
Reuse
An automated advocate for patient rights
Support
Quality
Security
License
Reuse
MRI-based Deep Learning Segmentation and Radiomics of Sarcoma Tumors in Mice
Support
Quality
Security
License
Reuse
This is the official repo for the Liver Kidney Stomach dataset introduced in the paper: SOS: Selective Objective Switch for Rapid Immunofluorescence Whole Slide Image Classification.
Support
Quality
Security
License
Reuse
GenNotes – public consensus annotation of genetic variants
Support
Quality
Security
License
Reuse
ImmuneDB - A system for the analysis and exploration of high-throughput adaptive immune receptor sequencing data
Support
Quality
Security
License
Reuse
Genomon pipeline in 2015
Support
Quality
Security
License
Reuse
Pipelines for NGS data preprocessing by the Bock lab and friends
Support
Quality
Security
License
Reuse
Support
Quality
Security
License
Reuse
Prescription writing and patient management software in java,javaFX
Support
Quality
Security
License
Reuse
CGView is a Java package for generating high-quality, zoomable maps of circular genomes.
Support
Quality
Security
License
Reuse
Phenotype and genotype-based patient similarity
Support
Quality
Security
License
Reuse
A platform for matching patient-specific genomic profiles to precision cancer medicine clinical trials
Support
Quality
Security
License
Reuse
s
sub-cortical_segmentationby sergivalverde
Python 11 Version:Current License: Permissive (BSD-3-Clause)
Sub-cortical brain tissue segmentation using CNN
Support
Quality
Security
License
Reuse
🎺 Plot DNA digestion band patterns with Python
Support
Quality
Security
License
Reuse
GREP: Genome for REPositioning drugs
Support
Quality
Security
License
Reuse
Divine: Prioritizing Genes for Rare Mendelian Disease in Whole Exome Sequencing Data
Support
Quality
Security
License
Reuse
U-Net for biomedical image segmentation
Support
Quality
Security
License
Reuse
CAFU: A Galaxy framework for exploring unmapped RNA-Seq data
Support
Quality
Security
License
Reuse
An implementation of the 3SPN2 and 3SPN2.C coarse-grained DNA forcefields in OpenMM
Support
Quality
Security
License
Reuse
GPS-based Imaging Geodesy toolbox in Python. [Improved from PyGPS]
Support
Quality
Security
License
Reuse
mass spectrometry proteomics in ruby
Support
Quality
Security
License
Reuse
R package for viewing mutation needle lollipop plot widgets
Support
Quality
Security
License
Reuse
Simple Dashboard to monitor Coronavirus 🦠(COVID-19) in Australia
Support
Quality
Security
License
Reuse
👨🏼⚕️ Si Cekon ( Symptom Check Online )
Support
Quality
Security
License
Reuse
A Patient Generation tool, which supports the creation of randomized Patient records using FHIR, HL7v2, and HL7v3 (Pan-Canadian Messages).
Support
Quality
Security
License
Reuse
A Python application to find and classify tetrads and quadruplexes in DNA/RNA 3D structures
Support
Quality
Security
License
Reuse
A web-based management tool for medical / social support facilities, including room management, client booking, keywork and medication tracking, contract printing, client notes, etc.
Support
Quality
Security
License
Reuse
D
Detecting-Cheating-in-Chessby moritzhambach
Python 11 Version:Current License: No License (No License)
License: No License (No License)Can chess engine use be detected just from the moves on the board? Let's try, using a CNN - LSTM architecture.
Support
Quality
Security
License
Reuse
Segmentation of white matter hyperintensities using 3D U-net
Support
Quality
Security
License
Reuse
Yet Another Model Using Neural Networks for Predicting Binding Preferences of for Test DNA Sequences
Support
Quality
Security
License
Reuse
Fork of ricopili for development of pipeline for family-based data
Support
Quality
Security
License
Reuse
Compliance test suite for the APIs defined in ga4gh-schemas. RETIRED 2018-01-24
Support
Quality
Security
License
Reuse
Reliable Genome project
Support
Quality
Security
License
Reuse
Super-resolution radial fluctuations (SRRF)
Support
Quality
Security
License
Reuse
A efficient peak finder for high coverage ChIP-seq experiments, written in python.
Support
Quality
Security
License
Reuse
Support
Quality
Security
License
Reuse
P
PEGASASby Xinglab
Pathway Enrichment-Guided Activity Study of Alternative Splicing (PEGASAS)
Python 12Updated: 4 y ago License: No License (No License)
12Updated: 4 y ago License: No License (No License)Support
Quality
Security
License
Reuse
2
2019WAIC-hackthon-Garbage-Classificationby 17Skye17
1st Place Solution to 2019WAIC hackthon Garbage Classification Challenge
Python 12Updated: 4 y ago License: No License (No License)
12Updated: 4 y ago License: No License (No License)Support
Quality
Security
License
Reuse
p
pathogenieby dmnfarrell
Desktop tool for microbial genome annotation and gene detection
Jupyter Notebook 12Updated: 2 y ago License: Strong Copyleft (GPL-3.0)
12Updated: 2 y ago License: Strong Copyleft (GPL-3.0)Support
Quality
Security
License
Reuse
M
Medical-Healthcare-3D-Imaging-AIby DeepHiveMind
:hospital: :eye_speech_bubble: Medical Healthcare AI | Robotic Surgery | Automated Brain Tumour Segmentation | Skin Cancer Lesion Detection & Segmentation (Melonama Recognition) | Lung Cancer detection (Chest CT Scan) | IMAGE SEGMENTATION TECHNIQUES
Python 12Updated: 4 y ago License: Permissive (BSD-3-Clause)
12Updated: 4 y ago License: Permissive (BSD-3-Clause)Support
Quality
Security
License
Reuse
s
seekerby damiankao
A suite of javascript apps for visualizing sequencing data
JavaScript 12Updated: 4 y ago License: No License (No License)
12Updated: 4 y ago License: No License (No License)Support
Quality
Security
License
Reuse
C
CoECI-CMS-Healthcare-Fraud-Preventionby NASA-Tournament-Lab
The Healthcare Fraud Prevention Partnership (HFPP) through United States Centers for Medicare & Medicaid Services (CMS) in collaboration with NASA’s Center of Excellence for Collaboration (CoECI), Harvard, and TopCoder developed software that supports a data exchange network that enables healthcare insurance-paying entities in both the public and private sector to safely and securely share information for purposes of prevention and detection of fraud, waste and abuse across partners.
JavaScript 12Updated: 4 y ago License: Permissive (Apache-2.0)
12Updated: 4 y ago License: Permissive (Apache-2.0)Support
Quality
Security
License
Reuse
h
healint-appby goyaljai
Healint is a way to assist doctors and patients in disease diagnosis and their treatment. It has a doctor bot which interacts with patients and finally predict the disease. Other than this it also has location based hospital recommendation system. It also facilitates in knowing your BMI and getting a diet chart
JavaScript 12Updated: 4 y ago License: Strong Copyleft (GPL-3.0)
12Updated: 4 y ago License: Strong Copyleft (GPL-3.0)Support
Quality
Security
License
Reuse
g
g3lollipop.jsby G3viz
Lollipop-diagram to visualize genomic mutations
JavaScript 12Updated: 4 y ago License: Permissive (MIT)
12Updated: 4 y ago License: Permissive (MIT)Support
Quality
Security
License
Reuse
i
intromat-fhirby sureshHARDIYA
GraphQL based Resource Server based on HL7 FHIR version R4
JavaScript 12Updated: 3 y ago License: Permissive (MIT)
12Updated: 3 y ago License: Permissive (MIT)Support
Quality
Security
License
Reuse
c
Support
Quality
Security
License
Reuse
d
dokazovi-beby ita-social-projects
The platform for verified medical speakers and their recommendations.
Java 12Updated: 3 y ago License: Permissive (MIT)
12Updated: 3 y ago License: Permissive (MIT)Support
Quality
Security
License
Reuse
u
uqviby abhinavsagar
Code for the paper Uncertainty Quantification using Variational Inference for Biomedical Image Segmentation
Python 12Updated: 4 y ago License: Permissive (MIT)
12Updated: 4 y ago License: Permissive (MIT)Support
Quality
Security
License
Reuse
S
Symfony-code-snippetsby nalabdou
Over 80 Symfony Code Snippets for PhP code And Over 80 Twig Code Snippets. Just type the letters 'sf' to get a list of all available Symfony Code Snippets. For Twig Just Type the Tag name and you will get AutoCompletion.
JavaScript 12Updated: 4 y ago License: Strong Copyleft (GPL-3.0)
12Updated: 4 y ago License: Strong Copyleft (GPL-3.0)Support
Quality
Security
License
Reuse
M
ManneDoFormsby Manne990
Free Open Source Components for Xamarin Forms
C# 12Updated: 4 y ago License: Permissive (MIT)
12Updated: 4 y ago License: Permissive (MIT)Support
Quality
Security
License
Reuse
v
vocatusby codeforamerica
An automated advocate for patient rights
PHP 12Updated: 4 y ago License: Permissive (Apache-2.0)
12Updated: 4 y ago License: Permissive (Apache-2.0)Support
Quality
Security
License
Reuse
M
MRI_Segmentation_Radiomicsby mdholbrook
MRI-based Deep Learning Segmentation and Radiomics of Sarcoma Tumors in Mice
Python 12Updated: 2 y ago License: Permissive (Apache-2.0)
12Updated: 2 y ago License: Permissive (Apache-2.0)Support
Quality
Security
License
Reuse
L
LKS-Datasetby cradleai
This is the official repo for the Liver Kidney Stomach dataset introduced in the paper: SOS: Selective Objective Switch for Rapid Immunofluorescence Whole Slide Image Classification.
Python 12Updated: 2 y ago License: No License (No License)
12Updated: 2 y ago License: No License (No License)Support
Quality
Security
License
Reuse
g
gennotesby OpenHumans
GenNotes – public consensus annotation of genetic variants
Python 11Updated: 6 y ago License: Permissive (MIT)
11Updated: 6 y ago License: Permissive (MIT)Support
Quality
Security
License
Reuse
i
immunedbby arosenfeld
ImmuneDB - A system for the analysis and exploration of high-throughput adaptive immune receptor sequencing data
Python 11Updated: 4 y ago License: Proprietary (Proprietary)
11Updated: 4 y ago License: Proprietary (Proprietary)Support
Quality
Security
License
Reuse
G
GenomonPipelineby Genomon-Project
Genomon pipeline in 2015
Python 11Updated: 5 y ago License: Proprietary (Proprietary)
11Updated: 5 y ago License: Proprietary (Proprietary)Support
Quality
Security
License
Reuse
o
open_pipelinesby epigen
Pipelines for NGS data preprocessing by the Bock lab and friends
Python 11Updated: 4 y ago License: No License (No License)
11Updated: 4 y ago License: No License (No License)Support
Quality
Security
License
Reuse
K
KGGseqby limx54
Java 11Updated: 4 y ago License: No License (No License)
11Updated: 4 y ago License: No License (No License)Support
Quality
Security
License
Reuse
D
Dr-Assistantby kmrifat
Prescription writing and patient management software in java,javaFX
Java 11Updated: 4 y ago License: Permissive (Apache-2.0)
11Updated: 4 y ago License: Permissive (Apache-2.0)Support
Quality
Security
License
Reuse
c
cgviewby paulstothard
CGView is a Java package for generating high-quality, zoomable maps of circular genomes.
Java 11Updated: 4 y ago License: Strong Copyleft (GPL-3.0)
11Updated: 4 y ago License: Strong Copyleft (GPL-3.0)Support
Quality
Security
License
Reuse
p
patient-similarityby buske
Phenotype and genotype-based patient similarity
Python 11Updated: 4 y ago License: Permissive (MIT)
11Updated: 4 y ago License: Permissive (MIT)Support
Quality
Security
License
Reuse
m
matchminer-apiby dfci
A platform for matching patient-specific genomic profiles to precision cancer medicine clinical trials
Python 11Updated: 3 y ago License: No License (No License)
11Updated: 3 y ago License: No License (No License)Support
Quality
Security
License
Reuse
s
sub-cortical_segmentationby sergivalverde
Sub-cortical brain tissue segmentation using CNN
Python 11Updated: 4 y ago License: Permissive (BSD-3-Clause)
11Updated: 4 y ago License: Permissive (BSD-3-Clause)Support
Quality
Security
License
Reuse
B
BandWagonby Edinburgh-Genome-Foundry
🎺 Plot DNA digestion band patterns with Python
Python 11Updated: 4 y ago License: Permissive (MIT)
11Updated: 4 y ago License: Permissive (MIT)Support
Quality
Security
License
Reuse
G
GREPby saorisakaue
GREP: Genome for REPositioning drugs
Python 11Updated: 4 y ago License: Proprietary (Proprietary)
11Updated: 4 y ago License: Proprietary (Proprietary)Support
Quality
Security
License
Reuse
d
divineby hwanglab
Divine: Prioritizing Genes for Rare Mendelian Disease in Whole Exome Sequencing Data
Python 11Updated: 4 y ago License: No License (No License)
11Updated: 4 y ago License: No License (No License)Support
Quality
Security
License
Reuse
r
radnetby adhiraiyan
U-Net for biomedical image segmentation
Python 11Updated: 4 y ago License: Permissive (MIT)
11Updated: 4 y ago License: Permissive (MIT)Support
Quality
Security
License
Reuse
C
CAFUby cma2015
CAFU: A Galaxy framework for exploring unmapped RNA-Seq data
Python 11Updated: 4 y ago License: No License (No License)
11Updated: 4 y ago License: No License (No License)Support
Quality
Security
License
Reuse
o
open3spn2by cabb99
An implementation of the 3SPN2 and 3SPN2.C coarse-grained DNA forcefields in OpenMM
Python 11Updated: 4 y ago License: Permissive (MIT)
11Updated: 4 y ago License: Permissive (MIT)Support
Quality
Security
License
Reuse
G
GigPyby ymcmrs
GPS-based Imaging Geodesy toolbox in Python. [Improved from PyGPS]
Python 11Updated: 4 y ago License: Strong Copyleft (GPL-3.0)
11Updated: 4 y ago License: Strong Copyleft (GPL-3.0)Support
Quality
Security
License
Reuse
m
mspireby princelab
mass spectrometry proteomics in ruby
Ruby 11Updated: 5 y ago License: Proprietary (Proprietary)
11Updated: 5 y ago License: Proprietary (Proprietary)Support
Quality
Security
License
Reuse
m
mutsneedleby freezecoder
R package for viewing mutation needle lollipop plot widgets
JavaScript 11Updated: 4 y ago License: No License (No License)
11Updated: 4 y ago License: No License (No License)Support
Quality
Security
License
Reuse
c
covid-19-australiaby cthroo
Simple Dashboard to monitor Coronavirus 🦠(COVID-19) in Australia
JavaScript 11Updated: 4 y ago License: No License (No License)
11Updated: 4 y ago License: No License (No License)Support
Quality
Security
License
Reuse
s
sicekonby padulkemid
👨🏼⚕️ Si Cekon ( Symptom Check Online )
JavaScript 11Updated: 5 y ago License: Strong Copyleft (GPL-3.0)
11Updated: 5 y ago License: Strong Copyleft (GPL-3.0)Support
Quality
Security
License
Reuse
p
patient-generatorby MohawkMEDIC
A Patient Generation tool, which supports the creation of randomized Patient records using FHIR, HL7v2, and HL7v3 (Pan-Canadian Messages).
C# 11Updated: 4 y ago License: Permissive (Apache-2.0)
11Updated: 4 y ago License: Permissive (Apache-2.0)Support
Quality
Security
License
Reuse
e
eltetradoby tzok
A Python application to find and classify tetrads and quadruplexes in DNA/RNA 3D structures
Python 11Updated: 2 y ago License: Permissive (MIT)
11Updated: 2 y ago License: Permissive (MIT)Support
Quality
Security
License
Reuse
m
mediguestby lee-b
A web-based management tool for medical / social support facilities, including room management, client booking, keywork and medication tracking, contract printing, client notes, etc.
JavaScript 11Updated: 4 y ago License: No License (No License)
11Updated: 4 y ago License: No License (No License)Support
Quality
Security
License
Reuse
D
Detecting-Cheating-in-Chessby moritzhambach
Can chess engine use be detected just from the moves on the board? Let's try, using a CNN - LSTM architecture.
Python 11Updated: 4 y ago License: No License (No License)
11Updated: 4 y ago License: No License (No License)Support
Quality
Security
License
Reuse
W
WMH2017by jyu-theartofml
Segmentation of white matter hyperintensities using 3D U-net
Python 11Updated: 4 y ago License: No License (No License)
11Updated: 4 y ago License: No License (No License)Support
Quality
Security
License
Reuse
n
neurobindby Kyubyong
Yet Another Model Using Neural Networks for Predicting Binding Preferences of for Test DNA Sequences
Python 11Updated: 4 y ago License: Permissive (Apache-2.0)
11Updated: 4 y ago License: Permissive (Apache-2.0)Support
Quality
Security
License
Reuse
p
picopiliby Nealelab
Fork of ricopili for development of pipeline for family-based data
Python 11Updated: 4 y ago License: No License (No License)
11Updated: 4 y ago License: No License (No License)Support
Quality
Security
License
Reuse
c
complianceby ga4gh
Compliance test suite for the APIs defined in ga4gh-schemas. RETIRED 2018-01-24
Java 10Updated: 7 y ago License: Permissive (Apache-2.0)
10Updated: 7 y ago License: Permissive (Apache-2.0)Support
Quality
Security
License
Reuse
w
wtchg-rgby popitsch
Reliable Genome project
Java 10Updated: 6 y ago License: Proprietary (Proprietary)
10Updated: 6 y ago License: Proprietary (Proprietary)Support
Quality
Security
License
Reuse
N
NanoJ-SRRFby HenriquesLab
Super-resolution radial fluctuations (SRRF)
Java 10Updated: 4 y ago License: Proprietary (Proprietary)
10Updated: 4 y ago License: Proprietary (Proprietary)Support
Quality
Security
License
Reuse
p
piqueby ryneches
A efficient peak finder for high coverage ChIP-seq experiments, written in python.
Python 10Updated: 5 y ago License: No License (No License)
10Updated: 5 y ago License: No License (No License)Support
Quality
Security
License
Reuse
c
chipexoby ialbert
Python 10Updated: 6 y ago License: No License (No License)
10Updated: 6 y ago License: No License (No License)Support
Quality
Security
License
Reuse