divine | Prioritizing Genes for Rare Mendelian Disease | Genomics library

by hwanglab Python Version: Current License: No License

X-Ray Key Features Code Snippets Community Discussions(10)Vulnerabilities Install Support

kandi X-RAY | divine Summary

divine is a Python library typically used in Healthcare, Pharma, Life Sciences, Artificial Intelligence, Genomics applications. divine has no bugs, it has no vulnerabilities, it has build file available and it has low support. You can download it from GitHub.

Divine is designed to make a daily-routine molecular diagnosis with high-throughput whole exome sequencing data more efficient. Using both patient phenotypic information and genetic variants, Divine that integrates patients’ phenotype(s) and WES data with 30 prior biological knowledge (e.g., human phenotype ontology, gene ontology, pathway database, protein-protein interaction networks, etc.) to prioritize potential disease-causing genes.

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Quality

Security

License

Reuse

Support

divine has a low active ecosystem.

It has 11 star(s) with 1 fork(s). There are 2 watchers for this library.

It had no major release in the last 6 months.

There are 3 open issues and 2 have been closed. On average issues are closed in 12 days. There are 1 open pull requests and 0 closed requests.

It has a neutral sentiment in the developer community.

The latest version of divine is current.

Quality

divine has 0 bugs and 0 code smells.

Security

divine has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

divine code analysis shows 0 unresolved vulnerabilities.

There are 0 security hotspots that need review.

License

divine does not have a standard license declared.

Check the repository for any license declaration and review the terms closely.

Without a license, all rights are reserved, and you cannot use the library in your applications.

Reuse

divine releases are not available. You will need to build from source code and install.

Build file is available. You can build the component from source.

Installation instructions, examples and code snippets are available.

It has 15403 lines of code, 708 functions and 114 files.

It has high code complexity. Code complexity directly impacts maintainability of the code.

Top functions reviewed by kandi - BETA

kandi has reviewed divine and discovered the below as its top functions. This is intended to give you an instant insight into divine implemented functionality, and help decide if they suit your requirements.

Annotate the genotype information .
Generate a VEGGene diagram based on phenotype and phenotype .
Calculate priors for each transcript .
Extract gene annotations from pre - transcription .
Determine if a record is retained .
Detect mutation type .
Extract gene data .
Create the disease rank table .
Write links to a VASTA record .
Build data source .

Get all kandi verified functions for this library.

divine Key Features

No Key Features are available at this moment for divine.

divine Examples and Code Snippets

No Code Snippets are available at this moment for divine.

Community Discussions

Trending Discussions on divine

How to store value of an input box in a variable?

Does the datetime.datetime.ctime() function return a fixed width string?

Cannot update parent's state from child component

Parse errors in do-blocks

How to ignore an arrayList item from json response in flutter?

Displaying the data issue on search and filtering in react

Join tables together

How to perform $group and $lookup aggregations together

Custom onChange for React Hook Form and watch()

React mui-datatable Element type is invalid

QUESTION

How to store value of an input box in a variable?

Asked 2022-Feb-10 at 07:40

I am trying to make a chat application with scaledrone. I was following this tutorial: https://www.scaledrone.com/blog/javascript-chat-room-tutorial/ but after setting up the basic chat, I wanted to let users define their own name. So I made an input box and then tried using js to take the input box value and assign it to a variable. And then for the name part of the chat application, instead of using the random name function I was using earlier. However, I got the error "can not read properties of null(reading addEventListener) in my console and the submit button did not show up at all. What did I do wrong? The code I used is in pastebin links below. The scaledrone documentation is here: https://www.scaledrone.com/docs/api-clients/javascript Thanks in advance. also, I added the raw text of my javascript file below because stack overflow won't let me post without adding some code(first time posting to stack overflow lol).

https://pastebin.com/9DvF3WnX https://pastebin.com/UrZ1xsMB

...

ANSWER

Answered 2022-Feb-10 at 07:40

How to store a input box value in a variable

Source https://stackoverflow.com/questions/71058776

QUESTION

Does the datetime.datetime.ctime() function return a fixed width string?

Asked 2022-Feb-07 at 10:58

If I were to run the following code:

...

ANSWER

Answered 2022-Feb-07 at 10:30

I've looked up datetime in the source code of cpython on github. It is implemented as this:

Source https://stackoverflow.com/questions/71016676

QUESTION

Cannot update parent's state from child component

Asked 2022-Jan-24 at 15:44

I have a parent component which contains data to build the rows of a table. A child component renders the actual table. Every row should be deletable, so I created a function inside the parent component to update its state and I passed it to the child component, so it could be called on the click of a button.

Even though the setter function is fired the state is not actually changed. The table is not re-rendered and the useEffect which has files as a dependency is not fired.

I'm not understanding why this happens, here's the problem reproduced in codesandbox. I would be very glad if anyone could help solving this.

Edit: I'm adding the code here since links can break over time, as @UmerAbbas pointed out.

...

ANSWER

Answered 2022-Jan-24 at 14:37

You need to use the function version of set state.

Source https://stackoverflow.com/questions/70835311

QUESTION

Parse errors in do-blocks

Asked 2022-Jan-15 at 16:06

When I try to load the following code to ghci

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ANSWER

Answered 2022-Jan-15 at 16:06

You need to fix the indentation of your program. The items under the do block should be indented at least one column more to the right than the start of the definition in the where clause. You should also indent the cases under the case … of clause:

Source https://stackoverflow.com/questions/70723048

QUESTION

How to ignore an arrayList item from json response in flutter?

Asked 2022-Jan-12 at 15:31

Here is my demo json response. Suppose I want to show All data from "CategoryList but I dont to show the list where "CategoryName": "NEW ARRIVALS", in my App.. How can I ignore specefic data from My Json response? Can I Filter it out by keyword New?

If New keyword arries in CategoryName in will ignore whole list

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ANSWER

Answered 2022-Jan-12 at 15:31

you can apply this filter to the list before sending it to the builder

Source https://stackoverflow.com/questions/70682325

QUESTION

Displaying the data issue on search and filtering in react

Asked 2021-Nov-01 at 15:17

I have created dummy users data and displayed it in the table format.

It contains search and filtering of the data(should consider the entire data set not based on the current page data).

Disabled pagination on displaying the filtering/search results. Here search, filtering function works fine on the 1st page. But when I tried to do a search/ filter on the second page, it displays no data found instead of the filtered results.

When I log the search/filter function results, it displays the proper result in the console, but it is not displaying in the table.

I'm not able to fix the issue. Here is the link to codesandbox.

...

ANSWER

Answered 2021-Nov-01 at 10:03

Your data flow is not correct. Let's review it together:

The pagination working properly, the getPaginatedData will get the proper data to show on your table. so far so good, but when you change the page pagination, the getPaginatedData will not be saved anywhere. this handler only returns the data on the table and there isn't any user to search in their name.

To solve the issue, I recommend using another state variable with another useEffect hook to control the page pagination and data (lead to get proper data on search).

You need to implement something like this:

Source https://stackoverflow.com/questions/69793634

QUESTION

Join tables together

Asked 2021-Oct-19 at 03:44

I need to write a SQL statement to find the ‘Action’ (category) films with the shortest running time (length). Your query should output the titles and lengths of the films. This is the database schema I have.

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ANSWER

Answered 2021-Oct-19 at 03:01

I am assuming you are using Oracle, since you are using VARCHAR2. If no records are returned, I assume you have your database set with case sensitivity on, so 'Action' <> 'ACTION'.

Either change your query so the case is correct, or change the where clause to not be case sensitive, and you should have data returned.

I also hope there are some indexes on the tables which you haven't mentioned...

Source https://stackoverflow.com/questions/69624401

QUESTION

How to perform $group and $lookup aggregations together

Asked 2021-Sep-14 at 15:16

Here I have two collections.

I want to get publishers details in an array by performing $group aggregation or any other method.

Books

...

ANSWER

Answered 2021-Sep-14 at 11:29

You can use this aggregation query:

Frist $lookup using the publisher array. Yes, you can use an array to join values.
Then $unwind the array returned by $lookup.
And $group by id to remove duplicates catching $first value for the name.
Then, (optional) use $project to output id instead of _id.
And (optional) $sort by id.

Source https://stackoverflow.com/questions/69176588

QUESTION

Custom onChange for React Hook Form and watch()

Asked 2021-Jul-19 at 10:07

I am trying to write a custom onChange and watch the change.

Error:

The watched myValue does not register the changes in the dropdown. Any ideas why?

According to the API documentation, this is possible by doing the following:

...

ANSWER

Answered 2021-Jul-19 at 09:58

With a useState hook it's working link so:

e.target.value is the selected value of your dropdown menu. To change your title dynamically you have to use a hook to serenader your component when the state changes.

See bellow:

Source https://stackoverflow.com/questions/68438351

QUESTION

React mui-datatable Element type is invalid

Asked 2021-Jul-16 at 18:59

I'm trying to build a basic mui-datatable component, but I'm getting the error:

...

ANSWER

Answered 2021-Jul-16 at 18:59

Import MUIDataTable without bracket like:

Source https://stackoverflow.com/questions/68414060

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