pique | efficient peak finder for high coverage ChIP
kandi X-RAY | pique Summary
kandi X-RAY | pique Summary
The pique package is a high efficiency peak finder for ChIP-seq experiments that yield high coverage allignments to the reference genome. It was developed for studying gene expression in Halobacterium salinarum sp. NRC1, sequenced using barcoded 40bp Illumina reads as part of an ongoing project in Marc Facciotti's lab at UC Davis.
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Top functions reviewed by kandi - BETA
- Detect contigs
- Find peaks for a given ARF
- Apply filter
- Calculate the noise threshold for a sample
- Load Pique data
- Add a contig
- Find peak locations for a given ARF
pique Key Features
pique Examples and Code Snippets
Community Discussions
Trending Discussions on pique
QUESTION
So I've been reading more thoroughly into LiveData
and my curiosity was piqued. LiveData
can hold a list of anything, but how does that compare to a regular List
in terms of memory allocation. I know generally it depends on what is being stored. A List
can be larger than a List
, if there's only 1 float and a 100 ints.
But, for example, lets say I had a LiveData>
of 10 phone numbers, and a List
of the same phone numbers. Would the LiveData
take up more memory?
I know LiveData
has a specific purpose in keeping the UI updated(I'm probably not articulating that accurately) and needs an Observer
, whereas a plain List
is easier to work with but can't meet the need LiveData
fulfills.
Or do most devices these days simply have enough memory that it's basically a moot point?
...ANSWER
Answered 2021-Apr-03 at 03:05Would the LiveData take up more memory?
For the same underlying list, yes. It's always going to occupy some space beyond the data it contains. Look at the source code to get a sense of what it actually adds on top of the contained data object.
You're probably overthinking it. If you have a problem with running out of memory, it's almost certainly not because of any LiveData. Your list itself is likely the bigger issue, and other parts of the core Android runtime are going to dwarf the size of your LiveData and its contents.
QUESTION
I am new to learning python and want to run bit of a trivia. Basically, I want to ask a random question from a list and then using an 'in' operator, figure if the user input of Y/N is correct or not. I'm stuck with determining how to check whether it is correct or not. Maybe my (incorrect) code can explain better.
...ANSWER
Answered 2021-Jan-21 at 14:39Most importantly you have to save your random choice so you can verify it later. So you should asign two variables before:
QUESTION
I'm working on a program that will take a text file and convert numbers from 0 - 99 to words (i.e 0 -> "zero", 99 -> "ninety nine"). I am able to convert the numbers and append them to the string within one function but the final sting output does not contain any of the converted numbers. Here is the code:
...ANSWER
Answered 2020-Nov-02 at 17:32I can think of two ways of doing this:
If you want to return the value of fullString
to your main
method, I suggest you modify convertToWord
so that it has return type String
, like this:
QUESTION
In my website I need to get the index of a clicked elements section.
There is one
and each one has a
.
Each sections has own, unique section headers.
If you click a list element the class turns from listFUTItem has-auction-data
to listFUTItem has-auction-data active
(tried to rebuild that at the playground).
At the
At the moment my code works like this:
itemList = document.querySelectorAll('.sectioned-item-list > ul')[2]
But the index has to be variable.
ANSWER
Answered 2020-Aug-17 at 06:52Use closest()
to traverse up to the
QUESTION
I recently encountered empty interfaces while using the Load()
method of Atomic.Value
. I was experimenting with empty interfaces type assertion a bit - https://play.golang.org/p/CLyY2y9-2VF
This piqued my interest, and I decided to take a peek behind the curtains to see what actions does a compiler take so that the code doesn't panic in case of trying to read the concrete value on a nil
interface {} (e.g., when you call Load.(type)
when Store hasn't been called yet).
I could see that in the unsafe version, compiler had this assembly instruction that cause the panic : call runtime.panicdottypeE(SB)
The panic instruction is obviously not present in the safe version. Can someone please explain this in more details on what compiler is doing when we capture return value with ok (and perhaps point me to the corresponding assembly instructions in the godbolt link)?
Here are the godbolt compiler links for unsafe version [1] and safe version [2].
...ANSWER
Answered 2020-Aug-13 at 15:45The quick summary: they do exactly the same thing, it's just that the case for ok == false
is different.
The two bits have the following in common:
QUESTION
According to MDN:
...if the value is a thenable (i.e. has a "then" method), the returned promise will "follow" that thenable, adopting its eventual state;
This piqued my interest a bit, so I wanted to see if it was possible to re-implement this functionality in pure Javascript. What I ended up with is this:
...ANSWER
Answered 2020-Jun-28 at 12:23Promise.resolve
does not rely on the return value of the .then()
invocation on the thenable value. It rather looks similar to this:
QUESTION
I got a list on a webpage.
After I press a button the system changes the class from listFUTItem has-auction-data
to listFUTItem has-auction-data won
.
I observe the list with a mutationobserver and want to get the index of the changed classelement.
I got no idea of how to get the index at all.
At the webpage you only can have ONE listFUTItem has-auction-data won
at once. I didnt know how to toggle it tbh. But thats not important here.
Here is a demo:
...ANSWER
Answered 2020-May-15 at 12:48Using jQuery you can use $(mutation.target).index()
.
QUESTION
I'm trying to create function that convert hierarchical data stored in array with following format: id, name, idType, members, idParent to text, children.
The data of array:
...ANSWER
Answered 2020-Mar-19 at 20:12Try doing like this.
QUESTION
I am trying to merge two dataframes, one containing variables like Date, Author, Paper, and IDs, the other containing texts and their IDs. I add, because it might have some importance, that the dataframe containing the texts has been obtained by converting a Vcorpus into a dataframe with the following code :
...ANSWER
Answered 2020-Mar-06 at 12:57There seems to be a problem with your reading function.
The output is not a common dataframe object, but rather some sort of list containing only a dataframe object.
Indeed, this line seems to work and give a proper merged dataframe:
QUESTION
Intellij has a really neat feature, that lets me seamlessly extract a block of code into its own method. I can then give this method a nice, descriptive name and move on with life.
However, intellij also tries to find other blocks of code that are similar, and then tries to perusade me that I should also refactor them too, to use this new method its made. And then, when I hit the oddly-named "cancel" button (which implies the whole operation is cancelled, but it's not, it just stops asking about any remaining blocks), it leaves me looking at whatever the block of code it last asked me about.
I really don't like this feature. Here's why: If I'm say comparing two ints - the naming of the code block will depend on the context of those two ints, but intellij will find any comparison between two ints anywhere in that file, and then insist that this is also a candidate for extraction.
Most times it is not, and to make it worse, when I ask intellij to stop it, in a fit of pique, leaves me wherever the last comparison was, so now I have to navigate back to where I was working.
How do I tell intellij just to extract exactly what I selected, and do nothing else?
...ANSWER
Answered 2020-Feb-17 at 15:56Please follow/vote/comment the issue created for this usability problem at YouTrack: https://youtrack.jetbrains.com/issue/IDEA-233201
Community Discussions, Code Snippets contain sources that include Stack Exchange Network
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Install pique
You can use pique like any standard Python library. You will need to make sure that you have a development environment consisting of a Python distribution including header files, a compiler, pip, and git installed. Make sure that your pip, setuptools, and wheel are up to date. When using pip it is generally recommended to install packages in a virtual environment to avoid changes to the system.
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