raygun | A simple python wrapper for NCBI BLAST

 by   ryneches Python Version: Current License: No License

kandi X-RAY | raygun Summary

kandi X-RAY | raygun Summary

raygun is a Python library. raygun has no bugs, it has no vulnerabilities, it has build file available and it has low support. You can download it from GitHub.

I got very tired of invoking formatdb and blastall from the command line and parsing the results. So I wrote this very simple wrapper to do it. This is not intended to be an efficient way of using BLAST. It's dumb but quick. It's point-and-shoot, like a raygun should be.
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            kandi-support Support

              raygun has a low active ecosystem.
              It has 8 star(s) with 1 fork(s). There are 1 watchers for this library.
              OutlinedDot
              It had no major release in the last 6 months.
              raygun has no issues reported. There are no pull requests.
              It has a neutral sentiment in the developer community.
              The latest version of raygun is current.

            kandi-Quality Quality

              raygun has no bugs reported.

            kandi-Security Security

              raygun has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

            kandi-License License

              raygun does not have a standard license declared.
              Check the repository for any license declaration and review the terms closely.
              OutlinedDot
              Without a license, all rights are reserved, and you cannot use the library in your applications.

            kandi-Reuse Reuse

              raygun releases are not available. You will need to build from source code and install.
              Build file is available. You can build the component from source.
              Installation instructions are not available. Examples and code snippets are available.

            Top functions reviewed by kandi - BETA

            kandi has reviewed raygun and discovered the below as its top functions. This is intended to give you an instant insight into raygun implemented functionality, and help decide if they suit your requirements.
            • Runs blastall on the given infile
            • B blast sequence
            • Initialize the directory
            • Delete the directory
            Get all kandi verified functions for this library.

            raygun Key Features

            No Key Features are available at this moment for raygun.

            raygun Examples and Code Snippets

            No Code Snippets are available at this moment for raygun.

            Community Discussions

            QUESTION

            I am having the error CS1513, even though I have the right amount of brackets. (Unity)
            Asked 2021-Jun-05 at 00:26

            (Solved) I recently started Unity to code, and am making a single player shooter. It is giving me the error CS1513, even though I believe I have all of the ending brackets that I need. The exact error message is:

            Assets\PlayerShoot.cs(32,36): error CS1513: } expected

            Even if I delete the else statement or change the variables to private, it still shows the error. Here is the code to look through, although be advised that the line numbers are not part of the code:

            ...

            ANSWER

            Answered 2021-Jun-04 at 21:45

            QUESTION

            How do I enter multiple timestamps for multiple columns as they are modified?
            Asked 2021-Feb-13 at 18:23

            I was able to modify if in any column within column 1 through 9 was modified the time stamp was entered on column 10 and last modified on column 11.

            I know need to get granular and timestamp when each column is first modified, while maintaining the existing timestamp setting.

            I believe this is as simple as an "if" statement but I can't seem to figure it out.

            Here is what I have so far. This gives me the date and time any cell, between column 1 and 9 is first modified, on that row and returns date and time on column 10, then last modified date and time on column 11 if any changes are done. Now i want to keep record of when column 1-9 are first modified as well, and enter them on the same sheet starting at column 12

            ...

            ANSWER

            Answered 2021-Feb-13 at 18:23
            Explanation:

            Your goal is:

            • Keep the datetime for which any cell in columns 1-9 is modified for the first time in column 10.

            • For every cell modified in columns 1-9 add a last modified stamp in columns 12-20 respectively. For example if column 1 is modified, update timestamp in column 12, if column 2 is modified update column 13 etc.

            For performance reasons, it is always a good practice to store the code you are using often, in variables:

            • For example e.source.getActiveSheet() is used 4 times in your code and every time it is called, it consumes resources. You can instead store it in a variable and use that variable instead.
            Solution:

            Source https://stackoverflow.com/questions/66186226

            QUESTION

            Not Able to reserve static IP in Azure IP reserve wizard
            Asked 2020-Jul-13 at 12:11

            I tried to reserve a static IP from Azure dashboard in multiple regions but no luck,

            Here is the error

            ...

            ANSWER

            Answered 2020-Jul-13 at 07:46

            The error message says it all.

            Source https://stackoverflow.com/questions/62865639

            QUESTION

            How can I resolve datatables library issue in my project?
            Asked 2020-Mar-09 at 11:40

            I create a project with a GridView and I had datatables library in my project. I create a page test which is in a master page, this master page already have the cdn

            ...

            ANSWER

            Answered 2020-Mar-09 at 11:40

            The error comes from the id of my datatable.I have a master page so I have to put the id of my master page with the id of my my element.

            so my id was #master_page_id_Grid

            BEFORE

            Source https://stackoverflow.com/questions/60511803

            QUESTION

            NLog Raygun - How to catch exception when calling SendInBackground
            Asked 2020-Feb-17 at 22:27

            I forked the NLog Raygun from Mindscape to provide more settings of Raygun in NLog.

            A RaygunTarget is created and needs to override Write method as follows NLog document (https://github.com/NLog/NLog/wiki/How-to-write-a-custom-target).

            To send an exception to Raygun, follows the below code

            ...

            ANSWER

            Answered 2020-Feb-13 at 20:49

            Instead of inheriting from TargetWithLayout then you can inherit from AsyncTaskTarget:

            Source https://stackoverflow.com/questions/60199975

            QUESTION

            How to catch non-MVC and non-REST exceptions in Spring Boot
            Asked 2020-Jan-19 at 20:48

            I've been able to find endless amounts of tutorials on how to catch unhandled exceptions in Spring MVC or Spring REST, but what I want to know is how to catch unhandled exceptions without using the Spring Web framework at all.

            I am writing an application which does not have a web component, and I am not going to import Spring Web only for exception handling.

            When a @Service throws an exception that goes unhandled, I need to catch it so that I can log it properly to Raygun.

            For example, consider this method in a Service that purposely throws an uncaught exception:

            ...

            ANSWER

            Answered 2017-Aug-16 at 06:37

            You can use the aop in spirngframework,first you should config the aop configuration.

            Source https://stackoverflow.com/questions/45706159

            QUESTION

            How do I configure an Azure App Service setting that isn't in the section of the web.config?
            Asked 2019-Dec-11 at 06:45

            I'm using deployment slots in an Azure App Service and overriding several web.config values by using Application Settings in each slot.

            I have a setting for Raygun, an error tracking service that is in a special section of the web.config. The Raygun key is stored in a section.

            The Azure section for Application settings corresponds to key-value pairs in the section.

            Connection strings correspond to named connection strings in the section.

            Here is a screen shot of a web.config file that illustrates the issue I'm trying to resolve:

            How can I override the RaygunSettings section in the Azure App Service Application Settings?

            ...

            ANSWER

            Answered 2019-Dec-11 at 06:45

            This is not possible from within the Azure app settings page. See: How to override web.config values in custom section in Azure Web App?

            An alternative would be to set this in your deployment pipeline. For example: This can be done using a variable in the release stage, if you use Azure Dev Ops.

            Other pipelines will have their own methods too.

            Source https://stackoverflow.com/questions/59277268

            QUESTION

            Visual Studio Code Entity Framework Core Add-Migration not recognized
            Asked 2019-Dec-05 at 13:53

            I've used yoman to generate an ASP.Net Core Web API application via the Visual Studio Code Editor. For reference, I followed this tutorial here

            The API works fine. However, I am trying to use Entity Framework Core Migrations with SQL Server. When I type the following into the Visual Studio Code Terminal:

            ...

            ANSWER

            Answered 2018-Jan-23 at 15:35

            The correct format to add a new migration is dotnet ef migrations add yourMigrationName

            and to update database is dotnet ef database update

            Source https://stackoverflow.com/questions/41536603

            QUESTION

            Available options for angular client side error tracking?
            Asked 2019-Dec-04 at 06:52


            I am currently working on a angular 7 SPA, which is a very heavy application on the client side. There could be scenarios that front end may fail due to some data issues, or maybe due to some script failures.
            Here I am looking for some recommendations for the client side error tracking. I can think of a custom framework where we get errors shipped to the backend and store. But I am looking for a standard 3rd party API which supports error handling + some miscellaneous app management features. Raygun is one of the options I came across, can you suggest me any other ones having a good experience.

            Thanks in Advance.

            ...

            ANSWER

            Answered 2019-Dec-04 at 06:52

            Try to use Sentry. It's self-hosted and cloud-based error monitoring that helps to discover, triage, and prioritize errors in real-time. It support each version of Angular. Really useful.

            Here is a description how to configure it inside Angular app: Sentry Angular Doc.

            Source https://stackoverflow.com/questions/59167915

            QUESTION

            REST Data format
            Asked 2019-Feb-12 at 15:42

            This might sound like a very basic question but what are the different data formats that a REST API can handle?

            I am aware that JSON, XML are the most common ones. I read here that it can handle plain text and HTML also.

            Question is that is there any restrictions as to what REST can handle?

            ...

            ANSWER

            Answered 2019-Feb-12 at 15:24

            No, there are no real restrictions. I recently created a REST api that used a mixture of:

            • text/markdown
            • text/csv
            • text/html
            • application/hal+json

            This one of the neat things about REST services. An image is just an image

            Source https://stackoverflow.com/questions/54653110

            Community Discussions, Code Snippets contain sources that include Stack Exchange Network

            Vulnerabilities

            No vulnerabilities reported

            Install raygun

            You can download it from GitHub.
            You can use raygun like any standard Python library. You will need to make sure that you have a development environment consisting of a Python distribution including header files, a compiler, pip, and git installed. Make sure that your pip, setuptools, and wheel are up to date. When using pip it is generally recommended to install packages in a virtual environment to avoid changes to the system.

            Support

            For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .
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            CLONE
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            https://github.com/ryneches/raygun.git

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            gh repo clone ryneches/raygun

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            git@github.com:ryneches/raygun.git

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