Building the constrained coding regions (CCR) model
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Reference genome quality scores
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BrainLab's hippocampal segmentation algorithm using CNNs
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A PyTorch implementation of image segmentation GAN from the paper "SegAN: Adversarial Network with Multi-scale L1 Loss for Medical Image Segmentation".
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Open source of Pyradiomics extension
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a Sequencing Quality Assessment Tool
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UTMOST (unified test for molecular signatures) is a method for cross-tissue gene expression imputation for transcriptome-wide association analyses.
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Java library to map LOINC-encoded test results to Human Phenotype Ontology
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The Genomic Epidemiology Application Ontology describes the genomics, laboratory, clinical and epidemiological contextual information required to support data sharing and integration for foodborne infectious disease surveillance and outbreak investigations.
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(Windows) AMDock: Assisted molecular docking with AutoDock4 and AutoDockVina
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scripts for the project of seven thaliana genomes assembly
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Official repository for RADTorch - The Medical Imaging Machine Learning Framework
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Dynamical systems methods for RNA velocity analysis
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Using combined evidence from replicates to evaluate ChIP-seq peaks
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biological-architecture-primerby francisglee
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BMI219-2017-ProteinFoldingby pfnet-research
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License: No License (No License)UCSF BMI219 Deep Learning (2017), Coding example (Prediction of protein folding with RNN and CNN)
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hgvslib provides functions to parse and compare the equivalency of variant strings described according to Human Genome Variation Society (HGVS) syntax.
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waka waka
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This platform enables parents, care takers or volunteers to collaboratively measure their child's progress against development models, track objectives, sessions and general changes such as diet, sleep habits, etc.
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An android chatbot that analyzes your medical symptoms
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Example on how to use pre trained networks on new classification problems.
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An EEG Simmulator for Computational NeuroScience
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Simple Python webservice to provide the latest statistics about Coronavirus COVID-19 in JSON format.
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Biomedical Event Extraction on CORD-19
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Detects hotspot regions for somatic mutations in 3D protein structures
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PHOsphoproteomic dissecTiOn using Networks
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Biomedical-Segmentation-with-PyTorchby SleyAI
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License: No License (No License)Biomedical Segmentation with PyTorch and different Convolutional Neural Network Architectures.
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Digital Cell Sorter (DCS): single cell RNA-seq analysis toolkit. Documentation:
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Predict MLST directly from uncorrected long reads
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User-friendly software for viewing and processing Sanger DNA sequencing trace files.
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vSNP -- validate SNPs
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GWAS gold standards repository
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Multimodal-autoencoder-for-breast-cancerby rezacsedu
Python 14 Version:Current License: No License (No License)
License: No License (No License)Prognostically Relevant Subtypes and Survival Prediction for Breast Cancer Based on Multimodal Genomics Data
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Usage of genetic algorithms to train a neural network in multiple OpenAI gym environments.
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Medical Diagnosis chatbot for common ailments
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Variational autoencoders for cancer data integration
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HL7 Argonaut FHIR project for Clinical Meteor
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Recover Cologne Api, kneipen kontakt tracer. recover provides localities a privacy-compliant, safe, and easy way for their guests to check in. See https://www.recoverapp.de/ for more details.
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:pill: Simple medication reminder for an oblivious friend.
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B-cell repertoire and clonal family tree explorer
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Open-Source Browser-based Platform for Artificial Intelligence Deployment in Medical Imaging
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AHRQ-CDS-Connect-PAIN-MANAGEMENT-SUMMARYby AHRQ-CDS
JavaScript 14 Version:Current License: Permissive (Apache-2.0)
The AHRQ CDS Pain Management Summary tool is part of the CDS Connect project https://cds.ahrq.gov/, sponsored by the Agency for Healthcare Research and Quality (AHRQ), and developed under contract with AHRQ by MITRE's CAMH FFRDC. The CDS Pain Management Summary tool is a SMART on FHIR dashboard for managing pain.
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AccuSyn: An Accurate Web-based Genome Synteny Browser
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A deep learning model to predict anticancer peptides.
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ccrby quinlan-lab
Building the constrained coding regions (CCR) model
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refereeby gwct
Reference genome quality scores
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sawtooth-healthcareby hyperledger-labs
This project focuses on interaction between Insurer, Insured Person (Patient), and Medical Facility
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HippMapp3rby mgoubran
BrainLab's hippocampal segmentation algorithm using CNNs
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SegANby gokriznastic
A PyTorch implementation of image segmentation GAN from the paper "SegAN: Adversarial Network with Multi-scale L1 Loss for Medical Image Segmentation".
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Py-rexby zhenweishi
Open source of Pyradiomics extension
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SQUATby luke831215
a Sequencing Quality Assessment Tool
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UTMOSTby Joker-Jerome
UTMOST (unified test for molecular signatures) is a method for cross-tissue gene expression imputation for transcriptome-wide association analyses.
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loinc2hpoby monarch-initiative
Java library to map LOINC-encoded test results to Human Phenotype Ontology
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genepioby GenEpiO
The Genomic Epidemiology Application Ontology describes the genomics, laboratory, clinical and epidemiological contextual information required to support data sharing and integration for foodborne infectious disease surveillance and outbreak investigations.
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AMDock-winby Valdes-Tresanco-MS
(Windows) AMDock: Assisted molecular docking with AutoDock4 and AutoDockVina
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pm4ngsby ncbi
Project Manager for NGS data analysis
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AMPRIL-genomesby schneebergerlab
scripts for the project of seven thaliana genomes assembly
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radtorchby radtorch
Official repository for RADTorch - The Medical Imaging Machine Learning Framework
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velodynby calico
Dynamical systems methods for RNA velocity analysis
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MSPCby Genometric
Using combined evidence from replicates to evaluate ChIP-seq peaks
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apple-receiptby shoshins
Apple InAppPurchase Receipt - Models, Parser, Validator
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LSTM-CNN-model-for-HARby lingjuanlv
LSTM-CNN model for Human Activity Recognition
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biological-architecture-primerby francisglee
Just some light reading.
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BMI219-2017-ProteinFoldingby pfnet-research
UCSF BMI219 Deep Learning (2017), Coding example (Prediction of protein folding with RNN and CNN)
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hgvslibby personalis
hgvslib provides functions to parse and compare the equivalency of variant strings described according to Human Genome Variation Society (HGVS) syntax.
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autismby Mindera
This platform enables parents, care takers or volunteers to collaboratively measure their child's progress against development models, track objectives, sessions and general changes such as diet, sleep habits, etc.
Java 14Updated: 4 y ago License: No License (No License)
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android-medical-assistantby zemahran
An android chatbot that analyzes your medical symptoms
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pre-trained-keras-exampleby innolitics
Example on how to use pre trained networks on new classification problems.
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eeg_simulatorby kebab-mai-haddi
An EEG Simmulator for Computational NeuroScience
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covid19-webserviceby mahmoudadel2
Simple Python webservice to provide the latest statistics about Coronavirus COVID-19 in JSON format.
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CORD19-BioMed-Event-Extractionby PlusLabNLP
Biomedical Event Extraction on CORD-19
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HotMAPSby KarchinLab
Detects hotspot regions for somatic mutations in 3D protein structures
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photonby jdrudolph
PHOsphoproteomic dissecTiOn using Networks
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Biomedical-Segmentation-with-PyTorchby SleyAI
Biomedical Segmentation with PyTorch and different Convolutional Neural Network Architectures.
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DigitalCellSorterby sdomanskyi
Digital Cell Sorter (DCS): single cell RNA-seq analysis toolkit. Documentation:
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krocusby andrewjpage
Predict MLST directly from uncorrected long reads
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seqtraceby stuckyb
User-friendly software for viewing and processing Sanger DNA sequencing trace files.
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genetics-gold-standardsby opentargets
GWAS gold standards repository
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Multimodal-autoencoder-for-breast-cancerby rezacsedu
Prognostically Relevant Subtypes and Survival Prediction for Breast Cancer Based on Multimodal Genomics Data
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ga-openai-gymby robertjankowski
Usage of genetic algorithms to train a neural network in multiple OpenAI gym environments.
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MedicalDiagnosisExpertSystemby 1nF0rmed
Medical Diagnosis chatbot for common ailments
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IntegrativeVAEsby CancerAI-CL
Variational autoencoders for cancer data integration
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hl7-argonaut-fhirby clinical-meteor
HL7 Argonaut FHIR project for Clinical Meteor
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rcvr-apiby railslove
Recover Cologne Api, kneipen kontakt tracer. recover provides localities a privacy-compliant, safe, and easy way for their guests to check in. See https://www.recoverapp.de/ for more details.
Ruby 14Updated: 3 y ago License: Strong Copyleft (AGPL-3.0)
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pilloby KayvanMazaheri
:pill: Simple medication reminder for an oblivious friend.
JavaScript 14Updated: 3 y ago License: Permissive (MIT)
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olmstedby matsengrp
B-cell repertoire and clonal family tree explorer
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Tesseract-MIby Tesseract-MI
Open-Source Browser-based Platform for Artificial Intelligence Deployment in Medical Imaging
JavaScript 14Updated: 4 y ago License: Permissive (MIT)
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AHRQ-CDS-Connect-PAIN-MANAGEMENT-SUMMARYby AHRQ-CDS
The AHRQ CDS Pain Management Summary tool is part of the CDS Connect project https://cds.ahrq.gov/, sponsored by the Agency for Healthcare Research and Quality (AHRQ), and developed under contract with AHRQ by MITRE's CAMH FFRDC. The CDS Pain Management Summary tool is a SMART on FHIR dashboard for managing pain.
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accusynby jorgenunezsiri
AccuSyn: An Accurate Web-based Genome Synteny Browser
JavaScript 14Updated: 2 y ago License: Permissive (MIT)
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ACP-DLby haichengyi
A deep learning model to predict anticancer peptides.
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flameby apigee
PHP 14Updated: 4 y ago License: Proprietary (Proprietary)
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