SQUAT | a Sequencing Quality Assessment Tool | Genomics library
kandi X-RAY | SQUAT Summary
kandi X-RAY | SQUAT Summary
SQUAT stands for Sequencing QUality Assessment Tool. It allows users to examine if their sequencing reads are truly representative of the original specie based on data assessments before and after genome assemblies. The tool aligns sequencing reads against the assembly with BWA and generates one pre-assembly and one post-assembly report at the end of the analysis.
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Top functions reviewed by kandi - BETA
- Main statistics processor
- Calculate binning coverage based on coverage
- Generate histogram of coverage histograms
- Calculate the GC content of a contigs file
- Generates a basic basic table plot
- Get an assembly report
- Analyze fastq file
- Generate a table from assembly reports
- Draw a label bar plot
- Displays the bar chart for alignment
- Calculate the number of columns in align_array
- Performs the CR score
- Save data to html file
- Flattens the distribution and aln_tool_tool
- Creates an image tag
- Draws the mismatching ratio plot
- Align the alignment of align_array
- Build a subset
- Generate a summary table
- Parse genomeeval results
- Returns a list of the main metrics
- Take a metric field from a tuple
- Creates a dictionary with label for each alignment
- Calculate the distribution for each label
- Draw the genome evaluation stats
- Save all plot figures to a PDF file
SQUAT Key Features
SQUAT Examples and Code Snippets
Community Discussions
Trending Discussions on SQUAT
QUESTION
I have a dataframe:
...
ANSWER
Answered 2022-Apr-14 at 12:41Is this what you want?
QUESTION
I have made a list of buttons yesterday, and i wanted to step it up a little by adding a hyperlink for each item in the list. However, pressing each button results in nothing at all (In fact, I believe a 'None' was resulted from this). All the YouTube links were made into an array, and for each item, i have tried to assign a hyperlink.
Here is the code for this:
...ANSWER
Answered 2022-Apr-09 at 14:53I made the following modifications to your code:
- Removed
callbackand used lambda to open the corresponding YouTube video. - Used zip to pair-wise extract the exercise name and the video link.
If you want to know why I wrote lambda x=link: webbrowser.open_new(x) and not lambda : webbrowser.open_new(link) refer to this question.
QUESTION
I'm a student coder. I would like to create a list of buttons. However there are too many buttons to fit onto a single screen. I have tried to incorporate a scrollbar, however the buttons do not go inside the textbox, even after setting the window to 'text'.
Here's what ive tried:
...ANSWER
Answered 2022-Apr-08 at 15:28First you need to use my_text1 as the parent of those buttons if you want to put them into my_text1.
Second you need to use my_text1.window_create(...) instead of .pack() to put those button into my_text1.
Final yscrollcommand = text_scroll should be yscrollcommand = text_scroll.set instead.
QUESTION
I have three collections:
Collection trainingPlan:
...ANSWER
Answered 2022-Mar-13 at 23:40I think this does what you want, and hopefully there's an easier way. I think a puzzle piece you hadn't considered yet was "$mergeObjects".
QUESTION
I have animation json file in the raw folder in res directory. I have made a data model , in which I want to store many properties with different data types.
Data Model
...ANSWER
Answered 2022-Feb-22 at 07:08update model code:-
QUESTION
My tables:
...ANSWER
Answered 2022-Feb-14 at 20:57SELECT *
FROM excercises t1
WHERE NOT EXISTS ( SELECT NULL
FROM fitnessRecords t2
JOIN excercises t3 USING (motionName)
WHERE t2.name = 'given name'
AND t1.primaryMuscleGroup = t3.primaryMuscleGroup )
QUESTION
I have used pd.wide_to_long() to create a longer df. I want to create a new column called "Bodyweight" that takes the value from the "Load" column when the exercise == "bodyweight" and displays it for each row entry for an athlete on that date. the current layout is:
ie
Input
...ANSWER
Answered 2022-Feb-06 at 09:24# Create an empty dict for the player's bodyweights
bodyweight_dict={}
# Iterate through each entry in column "Exercise"
for idx, entry in enumerate(df["Exercise"]):
# Check if the entry is equal to "Bodyweight"
if entry == "Bodyweight":
# If true, we will add the player's weight as a value to the player's name as a key
bodyweight_dict[f'{df["Player_Name"][idx]}'] = df["Load"][idx]
else:
# If false, we will continue the for loop
continue
# Iterate through each entry in column "Player_Name"
for idx, entry in enumerate(df["Player_Name"]):
# Assign the stored bodyweights to each row in the dataframe
df.loc[idx, "Bodyweight"] = bodyweight_dict[entry]
QUESTION
Basically I am attempting to set a CSS value based on whether a value passed into an SCSS mixin is even or odd.
Done some looking around and have found diddly squat. Any mention of odd / even in a search term with CSS/SCSS just results in :nth-child results.
Remainder operator doesn't work in CSS so that method of determining an odd / even number wont work. I then attempted to go down the route where a number divided by 2 would result in either a number type or integer type depending if it was even or odd, nope.
My only feasible option seems to be
...ANSWER
Answered 2022-Jan-21 at 21:37This is a good use of @function instead of a mixin. And you can use the % modulo operator for this.
Added a @mixin for clarity (and another option).
QUESTION
The problem I have is when I press the "back" button, the program opens up the correct GUI but doesn't get rid of the "LiftAnalysis" GUI. I have almost no experience with JFreeChart or using TimeSeriesCharts. Please suggest a method to hide the current GUI when the back button is pressed. Code is below
...ANSWER
Answered 2022-Jan-04 at 16:50There are a lot of issues on your program:
You're not modifying any of the properties of a
JFrame, so there's no need to extend from it, rather create an instance of aJFrame. See Extends JFrame vs. creating it inside the program
QUESTION
I would like to give each object in my Array a property that corresponds to an ID. I've tried this every possible way it seems like, below is the latest.
When I console.log the output individually it all looks good. However, when I run the output.push() and then log output, there are duplicates.
I found the below post which seems very similiar but after applying the changes suggested, I am still facing the same issue--In that I am seeing repeating IDs in the final output. The IndexID property is not unique and it should be for each iteration.
React object property value being duplicated on .push inside loop
Simple example first, then actual code example:
...ANSWER
Answered 2022-Jan-01 at 01:31The duplicate index values in the result can't be explained by the posted code.
In the code:
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