referee | Reference genome quality scores | Genomics library

 by   gwct Python Version: v1.2 License: GPL-3.0

kandi X-RAY | referee Summary

kandi X-RAY | referee Summary

referee is a Python library typically used in Healthcare, Pharma, Life Sciences, Artificial Intelligence, Genomics applications. referee has no bugs, it has no vulnerabilities, it has a Strong Copyleft License and it has low support. However referee build file is not available. You can download it from GitHub.

Reference genome quality scores
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            kandi-support Support

              referee has a low active ecosystem.
              It has 15 star(s) with 3 fork(s). There are 4 watchers for this library.
              OutlinedDot
              It had no major release in the last 12 months.
              There are 2 open issues and 4 have been closed. On average issues are closed in 3 days. There are no pull requests.
              It has a neutral sentiment in the developer community.
              The latest version of referee is v1.2

            kandi-Quality Quality

              referee has 0 bugs and 0 code smells.

            kandi-Security Security

              referee has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.
              referee code analysis shows 0 unresolved vulnerabilities.
              There are 0 security hotspots that need review.

            kandi-License License

              referee is licensed under the GPL-3.0 License. This license is Strong Copyleft.
              Strong Copyleft licenses enforce sharing, and you can use them when creating open source projects.

            kandi-Reuse Reuse

              referee releases are available to install and integrate.
              referee has no build file. You will be need to create the build yourself to build the component from source.
              Installation instructions are available. Examples and code snippets are not available.
              It has 3235 lines of code, 41 functions and 31 files.
              It has low code complexity. Code complexity directly impacts maintainability of the code.

            Top functions reviewed by kandi - BETA

            kandi has reviewed referee and discovered the below as its top functions. This is intended to give you an instant insight into referee implemented functionality, and help decide if they suit your requirements.
            • Calculate the quality scores for each line
            • Calculate haplotype calls
            • Calculate the correct score based on a reference base
            • Calculate a reference quality score
            • Read a reference FASTA file
            • End the program
            • Print an error message
            • Prints a string to a file
            • Output the output of the scaffolds
            • Output a bed file
            • Finish a bed bin
            • Determine the bin based on score
            • Prints the current step
            • Creates a string out of a string
            • Get the length of scaffolds in scaffolds
            • Get a title and sequence from a FASTA file
            • Parse command line options
            • Start the program
            • Performs compression
            Get all kandi verified functions for this library.

            referee Key Features

            No Key Features are available at this moment for referee.

            referee Examples and Code Snippets

            No Code Snippets are available at this moment for referee.

            Community Discussions

            QUESTION

            Find all condition matching fields in Firebase Firestore with Flutter
            Asked 2022-Mar-30 at 09:03

            I'm currently working on a scoring system for referees. The referees working on a specific station and can select their current team in the scoring system. They insert their score and upload it to the database.

            The database is structured in the following way:

            The group stands for the teams district and the subgroup for their age group. Both together forms the unique team. The referees can select the district, the age group and the score. The score object is stored in the collection Points like this:

            The referees should get the option to see all their scoring inserts. I could now go through the whole database and check everywhere, if the stations is equal to the referees station. And now the final question: Is this kind of solution really fitting for my problem or are there better and easier way e.g. store there inserts in another collection as well.

            ...

            ANSWER

            Answered 2022-Mar-30 at 09:03

            In firestore, there are collection group queries, which allow you to query across different collections with the same id (e.g. over all points collections), see the documentation here.

            You could also store the inserts in a separate collection under the referee for example, which may be handy when defining security rules etc. depending on your architecture.

            Source https://stackoverflow.com/questions/71674310

            QUESTION

            Sylvan CSV Reader C# Check for Missing Column in CSV
            Asked 2022-Mar-11 at 22:36

            @MarkPflug I have a requirement to read 12 columns out of 45 - 85 total columns. This is from multiple csv files (in the hundreds). But here is the problem, a lot of the times a column or two will be missing from some csv data files. How do I check in C# for a missing column in a csv file given I use the nuget package sylvan csv reader. Here is some code:

            ...

            ANSWER

            Answered 2022-Mar-11 at 22:36

            Looking at the source, it appears that GetOrdinal throws if the column name isn't found or is ambiguous. As such I expect you could do:

            Source https://stackoverflow.com/questions/71444843

            QUESTION

            How to split text in various columns
            Asked 2022-Mar-08 at 03:03

            I have this CSV file (in spreadsheet view)

            Jobs starts after the first *

            Job Group * Job1 * Job 2 * Job3

            Job Group Administrative law judges, adjudicators, and hearing officers * Appeals Examiner* Appeals Referee* Appellate Conferee* Hearing Examiner* Hearing Officer* Justice of The Peace* Traffic Court Referee Agricultural engineers * Agricultural Engineer* Agricultural Production Engineer* Agricultural Research Engineer* Farm Equipment Engineer* Research Agricultural Engineer Advertising sales agents * Advertising Account Executive* Advertising Agent* Advertising Solicitor* Display Advertising Sales Representative* Inside Sales Advertising Executive* Outside Sales Advertising Executive* Radio Time Salesperson* Signs and Displays Salesperson* Yellow Pages Space Salesperson

            I want to separate them into columns, but the number of job varies per group.

            Administrative: 7 jobs
            Agricultural: 5 jobs
            Advertising: 9 jobs

            Here are what I have tried:

            ...

            ANSWER

            Answered 2022-Mar-08 at 02:54

            Looks like this may help: Link I'm not the most experienced in this area of python, and personally think arrays are annoying because of this. This is the splitting process, and collecting it though. To open and read the file is a simple process with many easy YT tutorials.

            Hope this helped, again I don't know the most about this stuff but hopefully I hit some issues for you!

            Source https://stackoverflow.com/questions/71389315

            QUESTION

            My code prints out 'Invalid input' every time in a game Rock Paper Scissors
            Asked 2022-Feb-07 at 17:35

            My code prints out every time 'Invalid input', but I want it to print 'Invalid input' only when something other besides "rock", 'paper' , 'scissors', '!exit', '!rating' is written in the input, can someone help me, please, I don't really get why it is like this. Here you can see my code:

            ...

            ANSWER

            Answered 2022-Feb-07 at 17:35

            You can add a check that the input is one of the keys to referee().

            Source https://stackoverflow.com/questions/71022699

            QUESTION

            Convert a json string to list of objects in flutter
            Asked 2022-Feb-04 at 05:21

            Im trying to convert a json string to a list of objects in my flutter project. When I try to do that I get this error

            Unhandled Exception: NoSuchMethodError: Class 'String' has no instance method 'map'.

            My Object looks like this

            ...

            ANSWER

            Answered 2022-Feb-04 at 05:21

            Try using json.decode twice so that escape characters are removed.

            Source https://stackoverflow.com/questions/70981088

            QUESTION

            ctypes: How to access array of structure returned by function?
            Asked 2021-Dec-13 at 16:46

            I have a c++ API functions which I need to call from python using ctypes.
            In my c++ libamo.h, I have prototypes for struct and function as below,

            ...

            ANSWER

            Answered 2021-Dec-13 at 16:46

            Use the matching types in the struct. c_uint is typically 32-bit so your Python structure has the wrong size.

            To access the array, index the pointer (e.g. output_res[0].id) or use slicing.

            Here's a reproducible example with a test DLL:

            test.cpp

            Source https://stackoverflow.com/questions/70336171

            QUESTION

            Pandas: convert object to str
            Asked 2021-Oct-21 at 09:05

            I have the following dataframe:

            ...

            ANSWER

            Answered 2021-Oct-21 at 09:05

            I realize that object is not a problem, instead is the type that pandas use for string or mixed types (https://pbpython.com/pandas_dtypes.html). More precisely:

            Pandas dtype Python type NumPy type Usage object str or mixed string_, unicode_, mixed types Text or mixed numeric and non-numeric values int64 int int_, int8, int16, int32, int64, uint8, uint16, uint32, uint64 Integer numbers float64 float float_, float16, float32, float64 Floating point numbers

            Infact if I print the type of a single cell it gives me str

            Source https://stackoverflow.com/questions/69616585

            QUESTION

            Make an iframe heigher
            Asked 2021-Oct-11 at 18:29

            I am not able to cope with the iframe. I am trying to insert my curriculum in it, but although the width seems easily managable, the height does not repond to increments in the feature. The result is an iframe that ocupies the width of the page but is wide too narrwo to confortably scroll down. Downhere I leave the code (The issue is halfway) and my webpage, https://rubencioak.github.io/cv2.html, in case it's of any help.

            ...

            ANSWER

            Answered 2021-Oct-11 at 18:29

            Change your height in your inline style on your iframe to vh (viewport height)instead of %. I changed the height to 1000vh using Dev Tools and it nearly filled the whole screen. That's not the ideal fix, but it works.

            Source https://stackoverflow.com/questions/69110527

            QUESTION

            Problem with calling C++ function that receive command line arguments from Rust
            Asked 2021-Oct-04 at 20:23

            I am trying to call a C++ function from rust. The function suppose to receive the command lines arguments then print it. I used cmake to compile the C++ code to a static archive. I write a build.rs script to referee to the static library location and to make the static linking to it.

            ...

            ANSWER

            Answered 2021-Oct-04 at 20:23

            The problem is in this code:

            Source https://stackoverflow.com/questions/69437925

            QUESTION

            Getting value from WHEN part while a condition meets using EXISTS keyword in drools
            Asked 2021-Sep-22 at 18:48
            rule "attaching AV and impact rating"
            agenda-group "evaluate likelihood"
            dialect "java"
            when
                 Application($threatList:getThreatList())
                 $av:AttackVector()
                 exists  $threat:Application.Threats(impact == "Disclose Information")from $threatList
                 exists  AttackVector($av == AttackVector.REQUEST_MANIPULATION)
            then
                 RiskRating riskRating=new RiskRating($threat.getImpactRating(),$av.getLikelihood(),$av.getName());
                 insertLogical(riskRating);
            end
            
            ...

            ANSWER

            Answered 2021-Sep-22 at 18:48

            Remove the exists operation entirely.

            Source https://stackoverflow.com/questions/69277308

            Community Discussions, Code Snippets contain sources that include Stack Exchange Network

            Vulnerabilities

            No vulnerabilities reported

            Install referee

            Simply download the program and run it. You may want to add the Referee folder to your $PATH variable for ease of use.

            Support

            For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .
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