A deep learning model to predict anticancer peptides.
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Whole genome focused array SNP typer
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CAVA (Clinical Annotation of VAriants)
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Feature extraction algorithm for genomic data
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A package for detecting epistasis by machine learning
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Web crawler for DermNet (http://www.dermnet.com/) - one of the greatest data resources for skin diseases.
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Kaggle Competitions: Find the nuclei in divergent images to advance medical discovery
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DeepProfile framework, which learns a variational autoencoder (VAE) network from a vast quantity of publicly available gene expression samples and uses the learned network to encode a low-dimensional representation (LDR) for predicting complex phenotypes
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Covid-19 Virus 🦠 App 📱 using Dagger Hilt, Coroutines, ViewModel, Lifecycle, LiveData, Retrofit based on MVVM Architecture. 🛠
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Mixed Model Package For Genome-wide association mapping.
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SigProfilerSimulator allows realistic simulations of mutational patterns and mutational signatures in cancer genomes. The tool can be used to simulate signatures of single point mutations, double point mutations, and insertion/deletions. Further, the tool makes use of SigProfilerMatrixGenerator and SigProfilerPlotting.
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Retinal-Disease-Diagnosis-With-Residual-Attention-Networksby deontaepharr
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13 Version:Current
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License: No License (No License)Using Residual Attention Networks to diagnose retinal diseases in medical images
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SPVec: A Word2vec-inspired feature representation method for Drug-Target Interaction Prediction
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Human segmentation project(pytorch)
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retina image is loaded when the retina_image_tag is called from a apple retina display.
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Alerts you of people who allegedly assaulted others as you browse FetLife. Sister tools exist for Facebook (https://apps.facebook.com/predator-alert-tool/) and for OkCupid (http://www.onthemedia.org/story/predator-alert-ok-cupid/)
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a comparative genome browser for bacteriophages
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Easy to use relay mock and unit testing tool (works with Jest & Enzyme)
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Cozie Fitbit Smart Watch Clockface for Quick Surveys
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FindTreatment.gov, An 18F+SAMHSA Collaboration
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clinical-document-library-dotnetby AuDigitalHealth
C# 13 Version:Current License: Proprietary (Proprietary)
The Clinical Document Library simplifies the development process by providing vendors with a sample implementation of how to create clinical documents. The library supports all Agency-specified document types, as published on the Agency website.
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A suite of unique bioinformatics tools for the brave explorer.
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PyTorch implementation of Episodic Meta Reinforcement Learning on variants of the "Two-Step" task. Reproduces the results found in three papers. Check the ReadMe for more details!
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Deep Learning Based Tumor Type Classification Using Gene Expression Data
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Initial data release for drug-target interactions of the cancer targetome.
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A programming language inspired by genomics
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PyPI package for traversing extremely large FTP directory trees
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JSON-LD Contexts for Bioinformatics Data
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Python wrapper for Circos
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Genome Contact Map Explorer - gcMapExplorer. Visit:
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Submission for HackJaipur Hackathon 2020. Website: http://coronaxiv2.surge.sh/#/
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Novel Adjacency Identification with Barcoded Reads
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A toolkit to validate and consolidate antimicrobial resistance gene databases
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Subclassification of disease states based on the intersection of literature and expression
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A forward-time simulator for gene sequences modeling a variety of mutation and selection processes.
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A complete health care app with elegant GUI and following features : customized Medicine Reminder, daily health tips, information about nearby hospitals with navigation, complete information regarding a medicine or salt and first aid tips. First aid tips are fetched from remote database with 'save offline' feature for emergency.
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Pipeline for processing FASTQ data from an Illumina MiSeq to genotype human RNA viruses like HIV and hepatitis C
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Multisample Variant Format ToolKit
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Cost-efficient genome-wide gene expression profiling
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RNA-seq pipeline for raw sequence alignment and transcript/gene quantification.
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Sequence-database-curatorby Eslam-Samir-Ragab
Python 12 Version:Current License: Strong Copyleft (GPL-3.0)
This program dereplicates and/or filter nucleotide and/or protein database from a list of names or sequences (by exact match).
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NGSphy: phylogenomic simulation of next-generation sequencing data
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Harmonizing pathway databases using Biological Expression Language (BEL)
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Python library for the Pimoroni MAX30105 breakout
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Metagenomics/viromics pipeline that focuses on automation, user-friendliness and a clear audit trail. Jovian aims to empower classical biologists and wet-lab personnel to do metagenomics/viromics analyses themselves, without bioinformatics expertise.
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ACP-DLby haichengyi
A deep learning model to predict anticancer peptides.
Python 14Updated: 4 y ago License: No License (No License)
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wgfastby jasonsahl
Whole genome focused array SNP typer
Python 13Updated: 4 y ago License: No License (No License)
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CAVAby RahmanTeam
CAVA (Clinical Annotation of VAriants)
Python 13Updated: 4 y ago License: Permissive (MIT)
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gene-oracleby SystemsGenetics
Feature extraction algorithm for genomic data
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GenEpiby Chester75321
A package for detecting epistasis by machine learning
Python 13Updated: 4 y ago License: Permissive (MIT)
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DermNet-images-crawlerby tcxxxx
Web crawler for DermNet (http://www.dermnet.com/) - one of the greatest data resources for skin diseases.
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2018-Data-Science-Bowlby ace19-dev
Kaggle Competitions: Find the nuclei in divergent images to advance medical discovery
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DeepProfileby suinleelab
DeepProfile framework, which learns a variational autoencoder (VAE) network from a vast quantity of publicly available gene expression samples and uses the learned network to encode a low-dimensional representation (LDR) for predicting complex phenotypes
Python 13Updated: 4 y ago License: No License (No License)
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Covid19Statsby halilozel1903
Covid-19 Virus 🦠 App 📱 using Dagger Hilt, Coroutines, ViewModel, Lifecycle, LiveData, Retrofit based on MVVM Architecture. 🛠
Kotlin 13Updated: 2 y ago License: No License (No License)
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mixmogamby bvilhjal
Mixed Model Package For Genome-wide association mapping.
Python 13Updated: 4 y ago License: Permissive (MIT)
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machadoby lmb-embrapa
This repository provides users with a framework to store, search and visualize biological data.
Python 13Updated: 4 y ago License: Strong Copyleft (GPL-3.0)
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SigProfilerSimulatorby AlexandrovLab
SigProfilerSimulator allows realistic simulations of mutational patterns and mutational signatures in cancer genomes. The tool can be used to simulate signatures of single point mutations, double point mutations, and insertion/deletions. Further, the tool makes use of SigProfilerMatrixGenerator and SigProfilerPlotting.
Python 13Updated: 4 y ago License: Permissive (BSD-2-Clause)
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Retinal-Disease-Diagnosis-With-Residual-Attention-Networksby deontaepharr
Using Residual Attention Networks to diagnose retinal diseases in medical images
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SPVecby dqwei-lab
SPVec: A Word2vec-inspired feature representation method for Drug-Target Interaction Prediction
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humanseg.pytorchby cavalleria
Human segmentation project(pytorch)
Python 13Updated: 4 y ago License: Permissive (MIT)
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retina_image_tagby ffaerber
retina image is loaded when the retina_image_tag is called from a apple retina display.
Ruby 13Updated: 10 y ago License: Permissive (MIT)
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fetlife-faadeby fabacab
Alerts you of people who allegedly assaulted others as you browse FetLife. Sister tools exist for Facebook (https://apps.facebook.com/predator-alert-tool/) and for OkCupid (http://www.onthemedia.org/story/predator-alert-ok-cupid/)
JavaScript 13Updated: 5 y ago License: No License (No License)
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phameratorby scresawn
a comparative genome browser for bacteriophages
JavaScript 13Updated: 4 y ago License: Strong Copyleft (GPL-3.0)
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relay-testing-utilsby meuschke
Easy to use relay mock and unit testing tool (works with Jest & Enzyme)
JavaScript 13Updated: 6 y ago License: Permissive (MIT)
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cozieby cozie-app
Cozie Fitbit Smart Watch Clockface for Quick Surveys
JavaScript 13Updated: 2 y ago License: Weak Copyleft (LGPL-3.0)
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findtreatmentby CBHSQ
FindTreatment.gov, An 18F+SAMHSA Collaboration
JavaScript 13Updated: 3 y ago License: Proprietary (Proprietary)
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aws-amplify-connectby aws-samples
AWS Amplify Agent/Management portal and Amazon Connect dialer
JavaScript 13Updated: 3 y ago License: Proprietary (Proprietary)
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c
clinical-document-library-dotnetby AuDigitalHealth
The Clinical Document Library simplifies the development process by providing vendors with a sample implementation of how to create clinical documents. The library supports all Agency-specified document types, as published on the Agency website.
C# 13Updated: 4 y ago License: Proprietary (Proprietary)
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BLSSby Binomica-Labs
A suite of unique bioinformatics tools for the brave explorer.
C# 13Updated: 4 y ago License: Permissive (MIT)
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NBIA-TCIAby CBIIT
Java 13Updated: 2 y ago License: Proprietary (Proprietary)
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Meta-RL-TwoStep-Taskby BKHMSI
PyTorch implementation of Episodic Meta Reinforcement Learning on variants of the "Two-Step" task. Reproduces the results found in three papers. Check the ReadMe for more details!
Python 13Updated: 4 y ago License: Strong Copyleft (GPL-3.0)
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DL-based-Tumor-Classificationby HHHit
Deep Learning Based Tumor Type Classification Using Gene Expression Data
Python 13Updated: 4 y ago License: Permissive (MIT)
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The-Cancer-Targetomeby ablucher
Initial data release for drug-target interactions of the cancer targetome.
Java 12Updated: 4 y ago License: No License (No License)
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genomyby nishio
A programming language inspired by genomics
Python 12Updated: 6 y ago License: No License (No License)
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FTPwalkerby Bohdan-Khomtchouk
PyPI package for traversing extremely large FTP directory trees
Python 12Updated: 5 y ago License: No License (No License)
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biocontextby prefixcommons
JSON-LD Contexts for Bioinformatics Data
Python 12Updated: 4 y ago License: No License (No License)
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pyrcosby biosustain
Python wrapper for Circos
Python 12Updated: 5 y ago License: Strong Copyleft (GPL-3.0)
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gcMapExplorerby rjdkmr
Genome Contact Map Explorer - gcMapExplorer. Visit:
Python 12Updated: 5 y ago License: Strong Copyleft (GPL-3.0)
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CoronaXivby arghyadeep99
Submission for HackJaipur Hackathon 2020. Website: http://coronaxiv2.surge.sh/#/
Python 12Updated: 4 y ago License: No License (No License)
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NAIBRby raphael-group
Novel Adjacency Identification with Barcoded Reads
Python 12Updated: 4 y ago License: Permissive (MIT)
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MAMMO_Retinanetby hwejin23
Python 12Updated: 4 y ago License: Permissive (Apache-2.0)
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ARGDITby phglab
A toolkit to validate and consolidate antimicrobial resistance gene databases
Python 12Updated: 4 y ago License: Permissive (MIT)
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phenotypeXpressionby NCBI-Hackathons
Subclassification of disease states based on the intersection of literature and expression
Python 12Updated: 5 y ago License: Permissive (MIT)
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santa-simby santa-dev
A forward-time simulator for gene sequences modeling a variety of mutation and selection processes.
Java 12Updated: 4 y ago License: Permissive (Apache-2.0)
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CareForUby rishab951
A complete health care app with elegant GUI and following features : customized Medicine Reminder, daily health tips, information about nearby hospitals with navigation, complete information regarding a medicine or salt and first aid tips. First aid tips are fetched from remote database with 'save offline' feature for emergency.
Java 12Updated: 4 y ago License: No License (No License)
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adamajavaby AdamaJava
Java 12Updated: 2 y ago License: Proprietary (Proprietary)
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MiCallby cfe-lab
Pipeline for processing FASTQ data from an Illumina MiSeq to genotype human RNA viruses like HIV and hepatitis C
Python 12Updated: 2 y ago License: Strong Copyleft (AGPL-3.0)
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mvftoolsby jbpease
Multisample Variant Format ToolKit
Python 12Updated: 4 y ago License: Strong Copyleft (GPL-3.0)
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tag-based_RNAseqby z0on
Cost-efficient genome-wide gene expression profiling
Python 12Updated: 2 y ago License: No License (No License)
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rnaseq-pipelineby PavlidisLab
RNA-seq pipeline for raw sequence alignment and transcript/gene quantification.
Python 12Updated: 3 y ago License: Permissive (Unlicense)
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Sequence-database-curatorby Eslam-Samir-Ragab
This program dereplicates and/or filter nucleotide and/or protein database from a list of names or sequences (by exact match).
Python 12Updated: 4 y ago License: Strong Copyleft (GPL-3.0)
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ngsphyby merlyescalona
NGSphy: phylogenomic simulation of next-generation sequencing data
Python 12Updated: 4 y ago License: Strong Copyleft (GPL-3.0)
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PathMeby PathwayMerger
Harmonizing pathway databases using Biological Expression Language (BEL)
Python 12Updated: 4 y ago License: Permissive (Apache-2.0)
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max30105-pythonby pimoroni
Python library for the Pimoroni MAX30105 breakout
Python 12Updated: 4 y ago License: Permissive (MIT)
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Jovianby DennisSchmitz
Metagenomics/viromics pipeline that focuses on automation, user-friendliness and a clear audit trail. Jovian aims to empower classical biologists and wet-lab personnel to do metagenomics/viromics analyses themselves, without bioinformatics expertise.
Python 12Updated: 4 y ago License: Strong Copyleft (AGPL-3.0)
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