machado | repository provides users with a framework to store | Genomics library
kandi X-RAY | machado Summary
kandi X-RAY | machado Summary
Machado is a Django application that contains tools to interact with a Chado database. It provides users with a framework to store, search and visualize biological data. Detailed documentation can be found in the docs directory (Read the docs).
Support
Quality
Security
License
Reuse
Top functions reviewed by kandi - BETA
- Process an RNA - seq RNA - seq file
- Return the number of lines in a file
- Inserts a new organism
- Retrieve an organism from a string
- List all the coexpression group members
- Returns a queryset of the queryset
- List of orthologous features
- Returns a queryset of all features in the feature property
- Handle GET request
- Retrieve data for a feature
- Return the strand of an object
- Return the end length of an object
- Prepare a relationship
- Prepare DOI objects
- Return the start location of the object
- List features
- Returns a list of all subfeatures of the given object
- Returns the DOI of the FeatureProperty
- Prepare text for a feature
- Return a list of individual features
- Perform search
- Returns context data
- Returns a queryset queryset
- Returns the feature annotation
- Returns the display value
- Patch all web services
machado Key Features
machado Examples and Code Snippets
Community Discussions
Trending Discussions on machado
QUESTION
I have a program that is suppose to sort an input file (seq) and then output an RPT file.
This program code should be correct, the problem should only be in the sorting of this program.
PROBLEM: The program successfully sorts the data correctly, my problem is that I can not get the sort file to continue after being sorted to be formatted and do calculations.
PLEASE: show in code and explain, this is my first time trying the sort a file.
SEQ:
...ANSWER
Answered 2021-Apr-13 at 07:49In the PERFOM UNTIL...
loop, you are reading BASEBALL-FILE-OUT
, instead of the sorted BASEBALL-FILE-SORTED
.
QUESTION
I have a program that is suppose to sort an input file (seq) and then output an RPT file.
This program code should be correct, the problem should only be in the sorting of this program.
CURRENTLY: Program will not compile.
SORT: The output records need to sort LEAGUE-S (major) in descending order. TEAM-S (intermediate) ascending order. NAME-S (minor) ascending order.
PLEASE: show in code and explain, this is my first time trying the sort a file.
SEQ:
...ANSWER
Answered 2021-Apr-12 at 19:42ARE-THERE-MORE-RECORDS = 'NO'
is still true from its use in the input procedure. At the beginning of the output procedure, insert MOVE 'YES' TO ARE-THERE-MORE-RECORDS
. You also need to replace the READ BASEBALL-FILE-IN
with RETURN SORT-FILE
, add some fields to SORT-RECORD
, and use those fields for the report.
Why do you have BASEBALL-FILE-UNSORTED-IN
? It doesn't have any of the fields you need to move to SORT-RECORD
.
If you want to use BASEBALL-FILE-UNSORTED-IN
, then don't use an input procedure. Instead change the SORT
statement from INPUT PROCEDURE 120-SORT-INPUT-PROCEDURE
to USING BASEBALL-FILE-UNSORTED-IN
. Do not OPEN
or CLOSE
the file. That will be done by the runtime. Remove the 120-
and 130-
paragraphs.
Comment everything associated with BASEBALL-FILE-IN
, except 01 BASEBALL-RECORD-IN
and its data items. That effectively allows the BASEBALL-RECORD-IN
data definition to be used as a replacement for SORT-RECORD
. That reduces the number of changes that are needed.
QUESTION
I have a program that is suppose to sort an input file (seq) and they output an RPT file.
This program code should be correct, the problem should only be in the sorting of this program. Currently, it prints is weird chunks.
SORT: The output records need to sort LEAGUE-S (major) in descending order. TEAM-S (intermediate) ascending order. NAME-S (minor) ascending order.
SEQ:
...ANSWER
Answered 2021-Apr-12 at 17:57SORT
is not being used correctly. The report is being printed in 120-SORT-INPUT-PROCEDURE
using the fields from BASEBALL-RECORD-IN
. It should be printed in 130-SORT-OUTPUT-PROCEDURE
using the fields from SORT-RECORD
.
Furthermore, no records are sorted because there is no RELEASE
statement in the input procedure. To access records after the sort, a RETURN
statement is used in the same manner as a READ
statement for a sequential file.
The input procedure should be used to move the data from selected records to the sort record, after which the record is released to sort.
The output procedure may then used to produce a report from the sorted data by returning and printing each record until the there are no more sorted records.
QUESTION
I am getting an Array from an API which looks like this:
...ANSWER
Answered 2021-Jan-06 at 15:53What you're looking for is Square bracket notation which allows you to read a property based on a string.
QUESTION
I am trying to do something as simple as making anchor links that jump to a link on the same page. There is surprisingly only very limited documentation but I found following:
Using anchor link #id in Angular 6
@machado
comment recommends following which seems like the correct approach:
ANSWER
Answered 2018-Oct-15 at 18:32You probably just need to modify your anchor to this removing the #.
QUESTION
I am trying to pass the data obtained through a select to a table, however I realize that there is a problem with "character encoding", I think.
This example is the data output straight from the function that pulls data from the database:
...ANSWER
Answered 2020-Feb-12 at 20:14Add |safe to disable automatic escaping.
QUESTION
I'm trying to do a chloropeth map following this guide: https://www.r-graph-gallery.com/327-chloropleth-map-from-geojson-with-ggplot2.html
I mixed a bit of the tutorial with this answer(Chloropleth map with geojson and ggplot2), since I wasn't getting the result I expected. The cities were being filled with the same color, and it seemed as R wasn't understanding the data as numeric, and filled every city that had at least 1 user with the default color. (tried using as.numeric, didnt work either)
I downloaded "users by city" data from my website from Google Analytics using
...ANSWER
Answered 2020-Jan-28 at 22:09It looks like you have a couple relatively large values, while most are small. This causes 'skewing' of your color scale in a way that looks less interesting. Instead of graphing number of users, consider mapping based on a quantile .
Here is an implementation of grouping into quantiles using cut2()
from Hmisc
. In this case, values are cut into 5 groups.
QUESTION
I'm working with nltk in language portuguese.
That's is my text:
...ANSWER
Answered 2019-Dec-13 at 04:26word_token = list(pytext1) # if you want to have only word token from pytext1
print(word_token[0:10]) # printing first 10 token
#op
['Romance',',','Memórias','Póstumas','de','Brás','Cubas',',','1880','Memórias']
#if you want sent_token of text using sent_tokenize, read textfile in raw form
raw_text = machado.raw('romance/marm05.txt')
print(raw_text[0:100]) # printing first 100 character from sentence
#op
'Romance, Memórias Póstumas de Brás Cubas, 1880\n\nMemórias Póstumas de\nBrás Cubas\n\nTexto-fonte:\nObra C'
sent_token = nltk.sent_tokenize(raw_text)
print(sent_token[0:2]) # printing 2 sentence, which is tokenized from text
['Romance, Memórias Póstumas de Brás Cubas, 1880\n\nMemórias Póstumas de\nBrás
Cubas\n\nTexto-fonte:\nObra Completa, Machado de\nAssis,\nRio\nde Janeiro: Editora
Nova Aguilar, 1994.',
'Publicado originalmente em\nfolhetins, a partir de março de 1880, na Revista Brasileira.']
QUESTION
ANSWER
Answered 2019-Nov-16 at 17:35You could simply remove the COUNT()
around the subquery, and move it within the suubquery itself:
QUESTION
I'm creating my own personal site using bootstrap.
I've using bootstrap4 with some modifications. However the html margin is bigger than body.
I've already checked other questions and they say that
or some other tag has a default margin and you need to zero that, however I'm using a reset.css and plus I tried to zero margin of a lot of elements and it didn't work.
the reset css and the link to my web site: https://sitezinho--mateusmsouza.repl.co/
...ANSWER
Answered 2019-Jun-01 at 18:59Fala Mateus, blz?
Change margin: 0;
to margin: 0 !important;
This may fix it, but the correct way would be removing 'margin' from the class that is being applied to this element.
Bets regards,
Brhaka
Community Discussions, Code Snippets contain sources that include Stack Exchange Network
Vulnerabilities
No vulnerabilities reported
Install machado
Support
Reuse Trending Solutions
Find, review, and download reusable Libraries, Code Snippets, Cloud APIs from over 650 million Knowledge Items
Find more librariesStay Updated
Subscribe to our newsletter for trending solutions and developer bootcamps
Share this Page