CAVA | CAVA | Genomics library
kandi X-RAY | CAVA Summary
kandi X-RAY | CAVA Summary
CAVA (Clinical Annotation of VAriants) is a lightweight, fast, flexible and easy-to-use Next Generation Sequencing (NGS) variant annotation tool. It implements a clinical sequencing nomenclature (CSN), a fixed variant annotation consistent with the principles of the Human Genome Variation Society (HGVS) guidelines, optimised for automated clinical variant annotation of NGS data. CAVA has been extensively tested on exome data and is being used in the Mainstreaming Cancer Genetics (MCG) programme which applies NGS to increase the availability and affordability of clinical testing of cancer predisposition genes.
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Top functions reviewed by kandi - BETA
- Annotate the given variant with annotation
- Check if a variant is out of the variant
- Return the class annotation for a variant
- Get sequence ontology annotation
CAVA Key Features
CAVA Examples and Code Snippets
Community Discussions
Trending Discussions on CAVA
QUESTION
I have configured audiences in deployment.toml following this article WSO2-IS JWT Bearer Grant and now I'm facing an error when I try to start the WSO2-IS server.
deployment.toml:
...ANSWER
Answered 2021-Apr-10 at 08:00In the deployment.toml
file, you can't duplicate the same header tag. Use the following config.
QUESTION
I post this question because I've put in my code a DrawerLayout and when I play my app on my phone the icon (3 lines) of the DrawerLayout dosen't appear.
Here is my java code : MainActivity.java
...ANSWER
Answered 2020-Nov-20 at 10:57Okay You need to add this in your code
QUESTION
I'm trying to create a "fake" drag animation on a chart. The goal is to allow the user to manually edit points from a graph by dragging them.
The idea is fairly simple: I put a canvas on top of the graph and upon clicking on one of the graph's point, a red circle becomes visible on the clicked mark value, as well as 2 lines coming from the previous and next graph point. I "just" have to set the opacity of each shape from 0 to 1 and specify their position (XAML code):
...ANSWER
Answered 2020-May-22 at 10:31I found a solution, I don't really know how ugly this is, but it keeps my codebehind nice and blank.
To get access to that UI element, you have to first name it in the XAML:
QUESTION
I've been searching for help but was not able to find anything for what I needed.. I have something that looks like this:
So when the user input ingredients, it gets you the recipes online. Here, I want to fix the text box as it only shows one line. When I print out the output, it includes a new line and it looks nicer but once I insert this into the entry box, it ignores all new lines and spaces. This is my code for the interface:
...ANSWER
Answered 2020-Apr-24 at 18:58You will have to use a text widget instead of entry. Entry widgets do not allow text wrapping while text widgets do
QUESTION
I wanna use Interctive-Cavas to customize Google NestHub by HTML, CSS and Js.
In Example : https://medium.com/voice-tech-podcast/google-assistant-interactive-canvas-c83a959bdea0
...ANSWER
Answered 2020-Feb-07 at 13:18Best practice is to use the Interactive Canvas with a Single Page Application (SPA). In this scheme, your index.html is responsible for displaying everything, although it can pull in resources from other URLs.
This lets you do nice transitions and creates a less jarring experience for the user on subsequent page loads.
However, there is nothing stopping you from loading in a different page as part of your response. So for your welcome intent, you may wish to reply with the index page using something like this:
QUESTION
I would like for each ver
who have the attribute 'fmc' to get the text inside the tag part
.
so for my example just to return two ver (30 & 54)
the first loop print nothing. I need help to improve the function I am writing.
...ANSWER
Answered 2020-Feb-12 at 12:11ver.attrib
QUESTION
so i'm making a hybrid mobile app using framework7. I have a little problem though. Ok so, I have a sidepanel that automatically disables when the user opens the app. When the user logs in and gets redirected to the main view the sidepanel gets enabled. So far I've got that working. I'm having trouble disabling the sidepanel when the user logs out. I've read through some question on the Internet and tried a couple of things.
First I've tried using myApp.allowPanelOpen = false;
when the user logs out.
ANSWER
Answered 2017-Apr-28 at 17:14Ok so I got it working. Found this at a blog post. I ended up using the myApp.params.swipePanel= false;
parameter. I used this parameter on every page I wanted to disable the panel. Whenever I want to enable it on a certain page i used the myApp.params.swipePanel= 'left';
.
QUESTION
I have a webview
that opens from a messenger bot
.
From the webview
I want to send image data to the conversation (no URL - data coming from the canvas).
I tried to use Messenger SDK
beginShareFlow with file data attachment:
ANSWER
Answered 2019-May-19 at 07:46Per the SDK's section on sending attachments:
There are three ways to attach an asset to a message:
- URL
- File
- attachment_id
The attachment_id
refers to previously uploaded URL/File attachments. Sending raw file data is not an option. You must either upload the image to a URL or save it to a file. Blob URLs do not work because they refer only to data stored in the local system's memory. You need to move that data to an image or file on a server.
Your first option is to upload the image to a URL. Depending on how private the contents of the image are, you could use a public image hosting service like imgur, or you could upload the image to a public location on your server. If you want to keep the image hidden, you could save the image at a URL containing a randomly generated hash and delete that file as soon as the attachment has been uploaded to Messenger. However, you could keep the image totally private with the second option:
Upload the image from a (temp) fileYour second option is to upload the image according to a file location. By uploading the image to a file on your server, you could avoid the image ever becoming visible to the public. To avoid filling up server space, you could manually delete the file once the attachment has uploaded, or you could use a temp file. In fact, the SDK's example for sending a file demonstrates sending a temporary file saved in the /tmp
folder.
QUESTION
I'm currently creating a software that will be like paint, however I am stuck on getting a box to follow the mouse on the canvas. The purpose of the box is to get it to show where the mouse position is, to show what colour has been selected and to show the size of the brush. I found this piece of code online:
...ANSWER
Answered 2019-Mar-09 at 12:47There's a little problem with your code.
Here you're trying to set the position of the bx element according to the mouse position:
QUESTION
I would like to give all of the widgets on the screen a white canvas. I know how to create the intended canvas in KV
but in this case I must use Python code.
In my code, I tried self.cavas.add(...)
and in the code below, I use with self.canvas:
. Both attempts resulted in a canvas being drawn in the corner of the screen, rather than inside of the widgets.
How do I put a canvas to be inside of every widget using Python code?
Code:
...ANSWER
Answered 2019-Jan-21 at 22:56The problem is that in the LittleButtons
__init__()
method, its position is still the default of (0,0), so the position of the Rectangle
is set to (0,0). When you use KV
, it cleverly binds the Rectangle
position to the LittleButtons
position when you reference self.pos
. Unfortunately, in a .py
file, you must provide that binding yourself. So, here is a modification of your LittleButtons
that should handle the position changes:
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