CAVA | CAVA | Genomics library

 by   RahmanTeam Python Version: v1.2.3 License: MIT

kandi X-RAY | CAVA Summary

kandi X-RAY | CAVA Summary

CAVA is a Python library typically used in Healthcare, Pharma, Life Sciences, Artificial Intelligence, Genomics applications. CAVA has no bugs, it has no vulnerabilities, it has build file available, it has a Permissive License and it has low support. You can download it from GitHub.

CAVA (Clinical Annotation of VAriants) is a lightweight, fast, flexible and easy-to-use Next Generation Sequencing (NGS) variant annotation tool. It implements a clinical sequencing nomenclature (CSN), a fixed variant annotation consistent with the principles of the Human Genome Variation Society (HGVS) guidelines, optimised for automated clinical variant annotation of NGS data. CAVA has been extensively tested on exome data and is being used in the Mainstreaming Cancer Genetics (MCG) programme which applies NGS to increase the availability and affordability of clinical testing of cancer predisposition genes.
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            kandi-support Support

              CAVA has a low active ecosystem.
              It has 13 star(s) with 6 fork(s). There are 9 watchers for this library.
              OutlinedDot
              It had no major release in the last 12 months.
              There are 8 open issues and 2 have been closed. On average issues are closed in 8 days. There are 1 open pull requests and 0 closed requests.
              It has a neutral sentiment in the developer community.
              The latest version of CAVA is v1.2.3

            kandi-Quality Quality

              CAVA has no bugs reported.

            kandi-Security Security

              CAVA has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

            kandi-License License

              CAVA is licensed under the MIT License. This license is Permissive.
              Permissive licenses have the least restrictions, and you can use them in most projects.

            kandi-Reuse Reuse

              CAVA releases are available to install and integrate.
              Build file is available. You can build the component from source.
              Installation instructions are available. Examples and code snippets are not available.

            Top functions reviewed by kandi - BETA

            kandi has reviewed CAVA and discovered the below as its top functions. This is intended to give you an instant insight into CAVA implemented functionality, and help decide if they suit your requirements.
            • Annotate the given variant with annotation
            • Check if a variant is out of the variant
            • Return the class annotation for a variant
            • Get sequence ontology annotation
            Get all kandi verified functions for this library.

            CAVA Key Features

            No Key Features are available at this moment for CAVA.

            CAVA Examples and Code Snippets

            No Code Snippets are available at this moment for CAVA.

            Community Discussions

            QUESTION

            Deployment.toml - java.lang.StackOverflowError
            Asked 2021-Apr-10 at 08:00

            I have configured audiences in deployment.toml following this article WSO2-IS JWT Bearer Grant and now I'm facing an error when I try to start the WSO2-IS server.

            deployment.toml:

            ...

            ANSWER

            Answered 2021-Apr-10 at 08:00

            In the deployment.toml file, you can't duplicate the same header tag. Use the following config.

            Source https://stackoverflow.com/questions/67029021

            QUESTION

            draywerLayout whith no icon with 3 line
            Asked 2020-Nov-20 at 10:57

            I post this question because I've put in my code a DrawerLayout and when I play my app on my phone the icon (3 lines) of the DrawerLayout dosen't appear.

            Here is my java code : MainActivity.java

            ...

            ANSWER

            Answered 2020-Nov-20 at 10:57

            Okay You need to add this in your code

            Source https://stackoverflow.com/questions/64926359

            QUESTION

            Access GUI object method from ViewModel C#
            Asked 2020-May-22 at 15:23

            I'm trying to create a "fake" drag animation on a chart. The goal is to allow the user to manually edit points from a graph by dragging them.

            The idea is fairly simple: I put a canvas on top of the graph and upon clicking on one of the graph's point, a red circle becomes visible on the clicked mark value, as well as 2 lines coming from the previous and next graph point. I "just" have to set the opacity of each shape from 0 to 1 and specify their position (XAML code):

            ...

            ANSWER

            Answered 2020-May-22 at 10:31

            I found a solution, I don't really know how ugly this is, but it keeps my codebehind nice and blank.

            To get access to that UI element, you have to first name it in the XAML:

            Source https://stackoverflow.com/questions/61936254

            QUESTION

            How to make entry texts to set fit to the entry box using Tkinter, Python?
            Asked 2020-Apr-24 at 20:31

            I've been searching for help but was not able to find anything for what I needed.. I have something that looks like this:

            So when the user input ingredients, it gets you the recipes online. Here, I want to fix the text box as it only shows one line. When I print out the output, it includes a new line and it looks nicer but once I insert this into the entry box, it ignores all new lines and spaces. This is my code for the interface:

            ...

            ANSWER

            Answered 2020-Apr-24 at 18:58

            You will have to use a text widget instead of entry. Entry widgets do not allow text wrapping while text widgets do

            Source https://stackoverflow.com/questions/61415376

            QUESTION

            How to Import more screen Web Page with Google Interactive Canvas
            Asked 2020-Mar-10 at 09:29

            I wanna use Interctive-Cavas to customize Google NestHub by HTML, CSS and Js.

            In Example : https://medium.com/voice-tech-podcast/google-assistant-interactive-canvas-c83a959bdea0

            ...

            ANSWER

            Answered 2020-Feb-07 at 13:18

            Best practice is to use the Interactive Canvas with a Single Page Application (SPA). In this scheme, your index.html is responsible for displaying everything, although it can pull in resources from other URLs.

            This lets you do nice transitions and creates a less jarring experience for the user on subsequent page loads.

            However, there is nothing stopping you from loading in a different page as part of your response. So for your welcome intent, you may wish to reply with the index page using something like this:

            Source https://stackoverflow.com/questions/60112883

            QUESTION

            beginner [python] How to get attribute of of a child element and text of its subchild?
            Asked 2020-Feb-12 at 19:16

            I would like for each ver who have the attribute 'fmc' to get the text inside the tag part.

            so for my example just to return two ver (30 & 54)

            the first loop print nothing. I need help to improve the function I am writing.

            ...

            ANSWER

            Answered 2020-Feb-12 at 12:11

            QUESTION

            Disable Sidepanel - Framework7
            Asked 2019-Jun-05 at 14:24

            so i'm making a hybrid mobile app using framework7. I have a little problem though. Ok so, I have a sidepanel that automatically disables when the user opens the app. When the user logs in and gets redirected to the main view the sidepanel gets enabled. So far I've got that working. I'm having trouble disabling the sidepanel when the user logs out. I've read through some question on the Internet and tried a couple of things.

            First I've tried using myApp.allowPanelOpen = false; when the user logs out.

            ...

            ANSWER

            Answered 2017-Apr-28 at 17:14

            Ok so I got it working. Found this at a blog post. I ended up using the myApp.params.swipePanel= false; parameter. I used this parameter on every page I wanted to disable the panel. Whenever I want to enable it on a certain page i used the myApp.params.swipePanel= 'left';.

            Source https://stackoverflow.com/questions/43685198

            QUESTION

            Use Messenger SDK to send file data
            Asked 2019-May-19 at 07:46

            I have a webview that opens from a messenger bot.

            From the webview I want to send image data to the conversation (no URL - data coming from the canvas).

            I tried to use Messenger SDK beginShareFlow with file data attachment:

            ...

            ANSWER

            Answered 2019-May-19 at 07:46

            Per the SDK's section on sending attachments:

            There are three ways to attach an asset to a message:

            • URL
            • File
            • attachment_id

            The attachment_id refers to previously uploaded URL/File attachments. Sending raw file data is not an option. You must either upload the image to a URL or save it to a file. Blob URLs do not work because they refer only to data stored in the local system's memory. You need to move that data to an image or file on a server.

            Upload the image to a URL

            Your first option is to upload the image to a URL. Depending on how private the contents of the image are, you could use a public image hosting service like imgur, or you could upload the image to a public location on your server. If you want to keep the image hidden, you could save the image at a URL containing a randomly generated hash and delete that file as soon as the attachment has been uploaded to Messenger. However, you could keep the image totally private with the second option:

            Upload the image from a (temp) file

            Your second option is to upload the image according to a file location. By uploading the image to a file on your server, you could avoid the image ever becoming visible to the public. To avoid filling up server space, you could manually delete the file once the attachment has uploaded, or you could use a temp file. In fact, the SDK's example for sending a file demonstrates sending a temporary file saved in the /tmp folder.

            Source https://stackoverflow.com/questions/56164191

            QUESTION

            Box not showing on canvas Javascript
            Asked 2019-Mar-09 at 12:58

            I'm currently creating a software that will be like paint, however I am stuck on getting a box to follow the mouse on the canvas. The purpose of the box is to get it to show where the mouse position is, to show what colour has been selected and to show the size of the brush. I found this piece of code online:

            ...

            ANSWER

            Answered 2019-Mar-09 at 12:47

            There's a little problem with your code.

            Here you're trying to set the position of the bx element according to the mouse position:

            Source https://stackoverflow.com/questions/55077417

            QUESTION

            How to assign a canvas to multiple widgets in Kivy
            Asked 2019-Jan-21 at 22:56

            I would like to give all of the widgets on the screen a white canvas. I know how to create the intended canvas in KV but in this case I must use Python code.

            In my code, I tried self.cavas.add(...) and in the code below, I use with self.canvas:. Both attempts resulted in a canvas being drawn in the corner of the screen, rather than inside of the widgets.

            How do I put a canvas to be inside of every widget using Python code?

            Code:

            ...

            ANSWER

            Answered 2019-Jan-21 at 22:56

            The problem is that in the LittleButtons __init__() method, its position is still the default of (0,0), so the position of the Rectangle is set to (0,0). When you use KV, it cleverly binds the Rectangle position to the LittleButtons position when you reference self.pos. Unfortunately, in a .py file, you must provide that binding yourself. So, here is a modification of your LittleButtons that should handle the position changes:

            Source https://stackoverflow.com/questions/54298128

            Community Discussions, Code Snippets contain sources that include Stack Exchange Network

            Vulnerabilities

            No vulnerabilities reported

            Install CAVA

            CAVA v1.2.3 can be downloaded from https://github.com/RahmanTeam/CAVA/releases/tag/v1.2.3 in either .zip or .tar.gz format.

            Support

            See CAVA-v1.2,3_doc.pdf for detailed documentation and examples.
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            https://github.com/RahmanTeam/CAVA.git

          • CLI

            gh repo clone RahmanTeam/CAVA

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            git@github.com:RahmanTeam/CAVA.git

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