dgemm | Writing R and Python Packages | GPU library
kandi X-RAY | dgemm Summary
kandi X-RAY | dgemm Summary
Tutorial: Writing R and Python Packages with Multithreaded C++ Code using BLAS, AVX2/AVX512, OpenMP, C++11 Threads and Cuda GPU acceleration
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Trending Discussions on dgemm
QUESTION
I tried to extend the code in the answer of the above link, to include cross checks and openmp.
...ANSWER
Answered 2021-Feb-23 at 08:14You are calling DGEMM
in parallel using the same set of variables (because variables in parallel regions are shared by default in Fortran). This doesn't work and produces weird results due to data races. You have two options:
Find a parallel BLAS implementation where
DGEMM
is already threaded. Intel MKL and OpenBLAS are prime candidates. Intel MKL uses OpenMP, more specifically it is built with Intel OpenMP runtime, so it may not play very nicely with OpenMP code compiled with GCC, but it works perfectly with non-threaded code.Call
DGEMM
in parallel but not with the same set of arguments. Instead, perform block decomposition of one or both tensors and have each thread do the contraction for a separate block. Since Fortran uses column-major storage, it may be appropriate to decompose the second tensor:
QUESTION
I am under windows. The fortran code in mkl_example.f
:
ANSWER
Answered 2021-Feb-25 at 20:51The paths being added to the DLL search path in the python script are for directories that contain the static and import libraries for the compiler and MKL, not the runtime DLLs.
(Installation of the Intel compiler typically installs the compiler runtime in a Common files
directory, and adds that to the system search path - so the compiler runtime DLLs are likely being found by that route - but this does not apply to the MKL runtime DLLs.)
Use the correct directory in the os.add_dll_directory
call. It will be something like (you need to check your installation) C:\Program Files (x86)\IntelSWTools\compilers_and_libraries_xxxx\windows\redist\intel64_win\mkl
. Version agnostic symlinked directories may also be more suitable, depending on your needs.
(Deployment to another machine without the compiler installed will require a strategy around how you deploy dependencies, but this is a much larger topic.)
QUESTION
Related question Fortran: Which method is faster to change the rank of arrays? (Reshape vs. Pointer)
If I have a tensor contraction
A[a,b] * B[b,c,d] = C[a,c,d]
If I use BLAS, I think I need DGEMM (assume real values), then I can
- first reshape tensor
B[b,c,d]
asD[b,e]
wheree = c*d
, - DGEMM,
A[a,b] * D[b,e] = E[a,e]
- reshape
E[a,e]
intoC[a,c,d]
The problem is, reshape is not that fast :( I saw discussions in Fortran: Which method is faster to change the rank of arrays? (Reshape vs. Pointer) , in the above link, the author met some error messages, except reshape itself.
Thus, I am asking if there is a convenient solution.
...ANSWER
Answered 2021-Feb-19 at 10:31[I have prefaced the size of dimensions with the letter n to avoid confusion in the below between the tensor and the size of the tensor]
As discussed in the comments there is no need to reshape. Dgemm
has no concept of tensors, it only knows about arrays. All it cares about is that those arrays are laid out in the correct order in memory. As Fortran is column major if you use a 3 dimensional array to represent the 3 dimensional tensor B in the question it will be laid out exactly the same in memory as a 2 dimensional array used to represent the 2 dimensional tensor D. As far as the matrix mult is concerned all you need to do now is get the dot products which form the result to be the right length. This leads you to the conclusion that if you tell dgemm that B has a leading dim of nb, and a second dim of nc*nd you will get the right result. This leads us to
QUESTION
I have two dense matrices with the sizes (2500, 208) and (208, 2500). I want to calculate their product. It works fine and fast when it is a single process but when it is in a multiprocessing block, the processes stuck in there for hours. I do sparse matrices multiplication with even larger sizes but I have no problem. My code looks like this:
...ANSWER
Answered 2020-Dec-20 at 19:38As a workaround, I tried multithreading instead of multiprocessing and the issue is resolved now. I am not sure what the problem behind multiprocessing though.
QUESTION
I have the following Fortran code from https://software.intel.com/content/www/us/en/develop/documentation/mkl-tutorial-fortran/top/multiplying-matrices-using-dgemm.html
I am trying to use gfortran complile it (named as dgemm.f90
)
ANSWER
Answered 2020-Dec-14 at 06:04You should follow Intel's website to set the compiler flags for gfortran + MKL. Otherwise your will be linking with something else.
QUESTION
Related question Multiplying real matrix with a complex vector using BLAS
Suppose I aim at C = A*B, where A, B, C are real, complex, and complex matrices, respectively. A[i,j] * B[j,k] := (A[i,j] Re(B[j,k]), A[i,j] Im(B[j,k])). Is there any available subroutine in BLAS?
I can think about split B into two real matrices for the real and imaginary part, do dgemm
then combine, (combine should be faster than matrix multiplication, even directly using nested loops(?)) as suggested by Multiplying real matrix with a complex vector using BLAS
I don't know if there is a direct option in BLAS.
...ANSWER
Answered 2020-Dec-12 at 09:59No, there is no routine in standard BLAS that multiplies real and complex matrices together to produce a complex result.
QUESTION
In my fortran code, matrix multiplication is handled with 'dgemm' in openblas library. The size of matrix is quite big, 7000 X 7000, so I want to reduce the computational cost in the matrix manipulation.
I tried to call 'dgemm' using multi-threads, but it seems not working (working as single thread only). The 'time' command is used to record the required time to calculate. Regardless I use -lpthreads flag or not, my calculation time is the same. It seems to me that the multi-threading is not working.
The below is my test.f and compile command. Can you recommend the way that I can use multi-threads in my matrix manipulation? Sorry about the duplication of questions and too simple and fundamental things, but the existing Q&As are not working for me. Thank you for any comments!
- In bashrc :
export OPENBLAS_LIB=/mypath/lib
export OPENBLAS_INC=/mypath/include
export OMP_NUM_THREADS=4
export GOTO_NUM_THREADS=4
export OPENBLAS_NUM_THREADS=4
- command for source :
gfortran test.f -o test.x -lopenblas -lpthread
sample source
...
ANSWER
Answered 2020-Nov-07 at 19:20You need to enable optimization for parallelization to take effect, i.e. compile as such
QUESTION
I'm trying to speed up an optimization routine using MKL's blas implementation in fortran. I need to have the result in a shared library so that it is accessible from a larger script. I can compile and link my code without any warnings, but the resulting .so
file has an undefined reference to the blas routine I'm trying to call, namely dgemm
.
relevant section of the fortran code:
...ANSWER
Answered 2020-Oct-29 at 23:07How do I get the linker to put in the relevant function into the so file?
That's not how shared libraries work; you need to ship the so
with your other files (and set the appropriate RPATH
), or link to a static version of the library.
When you say:
when I try to load the .so file, I crash with a segfault
This sounds like you're trying to directly dlopen()
or something similar; just let the dynamic (runtime) linker do its job.
QUESTION
I have an app which uses the armadillo library to do some matrix calculations. It compiles fine against the Accelerate.framework, but is rejected at the app store:
ITMS-90338: Non-public API usage - The app references non-public symbols...ddot, dgemm, dgemv, dsyrk.
These symbols are from the BLAS library and are included in Accelerate, but are apparently not public. Is there a way to use armadillo without getting this error?
...ANSWER
Answered 2020-Sep-09 at 15:18For iOS, one problem that arises when you submit the app store is you will get a rejection unless you tell the armadillo library to NOT use BLAS.
You might also get the same for any of these symbols:
QUESTION
I have been trying for some time to compile and link the OpenBLAS lib to multiply to matrices together using dgemm. I finally was able to compile the OpenBLAS after installing MSYS2 and the mingw64 packages from MSYS2 using pacman. My intention is to use the OpenBLAS as a static lib. So I wrote a simple fortran code to multiply the matrices together using dgemm. Here is the fortran code:
...ANSWER
Answered 2020-Sep-01 at 21:08The subroutine is just dgemm
, not dgemm_
. You just call it
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