speckle | Laser speckle contrast imaging | Computer Vision library

 by   tstarling C++ Version: Current License: No License

kandi X-RAY | speckle Summary

kandi X-RAY | speckle Summary

speckle is a C++ library typically used in Artificial Intelligence, Computer Vision, Deep Learning, Numpy applications. speckle has no bugs, it has no vulnerabilities and it has low support. You can download it from GitHub.

This project is based on the observation by Lisa Richards et al at the University of Texas who noted that a medical imaging technique called laser speckle contrast imaging could be done with inexpensive and commonplace hardware: specifically a laser pointer and a webcam. The University of Texas team, led by Andrew Dunn, previously provided software for the interpretation of captured images, but this software has been withdrawn and was presumably not open source. The University of Texas team used a raw Bayer pattern capture tool provided by Logitech. This tool has since been withdrawn, and recent Logitech cameras do not appear to support raw image capture. However, I have noticed that the Microsoft Kinect provides raw video streams for its two cameras. It also has an IR laser which (with a minor optical modification: adding a diffuser) appears to be suitable for illumination. Kinect devices for the obsolete Xbox 360 can be obtained very cheaply on the second hand market. The light absorption spectrum of skin falls steeply at the far end of the visible spectrum and into the near infrared, thus an IR laser should provide better images of blood flowing under the skin than visible light.
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            kandi-support Support

              speckle has a low active ecosystem.
              It has 8 star(s) with 2 fork(s). There are 2 watchers for this library.
              OutlinedDot
              It had no major release in the last 6 months.
              There are 0 open issues and 1 have been closed. On average issues are closed in 3 days. There are no pull requests.
              It has a neutral sentiment in the developer community.
              The latest version of speckle is current.

            kandi-Quality Quality

              speckle has no bugs reported.

            kandi-Security Security

              speckle has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

            kandi-License License

              speckle does not have a standard license declared.
              Check the repository for any license declaration and review the terms closely.
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              Without a license, all rights are reserved, and you cannot use the library in your applications.

            kandi-Reuse Reuse

              speckle releases are not available. You will need to build from source code and install.

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            speckle Key Features

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            speckle Examples and Code Snippets

            No Code Snippets are available at this moment for speckle.

            Community Discussions

            QUESTION

            Python image types, shapes, and channels for segmentation
            Asked 2021-Jun-07 at 07:07

            I am using this tutorial for instance segmentation in PyTorch. The test data the tutorial uses includes images and accompanying image masks from a dataset available here. I have an example of one of the image masks from that data set here (example data for this question). That mask looks like this by default in the dataset:

            The tutorial uses this code:

            ...

            ANSWER

            Answered 2021-Jun-07 at 07:07

            Following is an example how to create a grayscale image representing classes for a segmentation task or similar.

            On some black background, draw some shapes with fill values in the range of 1, ..., #classes. For visualization purposes, this mask is plotted as perceived as a regular grayscale image as well as scaled to the said value range – to emphasize that the mask looks all black in general, but there's actual content in it. This mask is saved as a lossless PNG image, and then opened using Pillow, and converted to mode P. Last step is to set up a proper palette for the desired number of colors, and apply that palette using Image.putpalette.

            Source https://stackoverflow.com/questions/67642262

            QUESTION

            Remove rows corresponding to certain levels in a column in data frame
            Asked 2021-Apr-17 at 04:36

            My dataset is merged from 2 huge datasets and then NA-removed. It is now in shape (2707,18).

            I have done

            ...

            ANSWER

            Answered 2021-Apr-17 at 04:36

            Try to use pandas.Series.str.strip() to remove heading and tailing whitespace in column Record Status and use pandas.Series.isin() to filter column

            Source https://stackoverflow.com/questions/67134664

            QUESTION

            How do I change colors below a level to transparency
            Asked 2021-Apr-12 at 10:25

            I have an image with a black shape in the middle. The surrounding area is white with varying shades of gray speckles surrounding it. I used the Gimp eraser to remove most of the surrounding image. I did a color to alpha filter to the rest and it worked to 90%. When I export the work to a PNG I notice there is gradient noise / artifact in the png in the shape of what I left around the black shape with the erasure. It is a thin film of gray shading. How do I remove that last artifact of the shades of gray splotches? Thank you.

            ...

            ANSWER

            Answered 2021-Apr-12 at 10:25
            • Layer ➤ Mask ➤ Add layer mask, and initialize to Transfer layer's alpha channel
            • Start the Levels tool (which will act on the mask), and drag the leftmost handle in the "Input" area your grey shade disappears.
            • You can use the middle handle of the same area to adjust the pixellation of the edges.
            • When happy with the result use Layer ➤ Mask ➤ Apply layer mask.

            But this problem stems from something you missed earlier. You should probably have removed another color in the color-to-alpha step. Or if there is a pattern in the background, you can try to replicate the complete pattern on an additional layer that you then put in "Color Erase" mode.

            Source https://stackoverflow.com/questions/67049556

            QUESTION

            Apply CIHardLightBlendMode with 50% alpha
            Asked 2021-Mar-02 at 18:33

            I'm blending a CIImage with a speckled grey (film grain like) file:

            ...

            ANSWER

            Answered 2021-Mar-02 at 18:33

            It's not very intuitive, but you can use the CIColorMatrix filter to manipulate the image's alpha value:

            Source https://stackoverflow.com/questions/66443626

            QUESTION

            WINAPI, old value in backround after RedrawWindow()
            Asked 2020-Dec-31 at 23:42

            I'm beginner in WINAPI and I would like to ask you about help. I have main window with about 10 child's windows (edit boxes). I need click into 1 of them and see label (text) in another static box. The problem is that text is changed, the old text from previous action is drawn in the backround as you can see...

            It is still overdrafted until the main window is redrawed... I think it is not efficient to redraw main window each text change... Does anyone have experiance with this problem? Could you help me? Thank you very much!

            ...

            ANSWER

            Answered 2020-Dec-31 at 23:42

            The problem is that Microsoft never anticipated the text in a static control changing, so they didn't implement a proper WM_ERASE to erase the static background. You can subclass the control and do it yourself, or you can draw over the static control a rectangle of the background color before changing the text.

            Source https://stackoverflow.com/questions/65526267

            QUESTION

            apply filters on images when there is no data pixels
            Asked 2020-Dec-13 at 09:01

            I have image that contains many no data pixels. The image is 2d numpy array and the no-data values are "None". Whenever I try to apply on it filters, seems like the none values are taken into account into the kernel and makes my pixels dissapear.

            For example, I have this image:

            I have tried to apply on it the lee filter with this function (taken from Speckle ( Lee Filter) in Python):

            ...

            ANSWER

            Answered 2020-Dec-10 at 16:46

            Seems like a simple solution is to set the non values to zero. I don't know how you would get around this, because most image processing kernels require some value to for you to apply. a[numpy.argwhere(a==None)] = 0

            Source https://stackoverflow.com/questions/65237788

            QUESTION

            TypeError: 'list' object is not callable - assertWarns()
            Asked 2020-Dec-03 at 17:13

            I have the following function:

            ...

            ANSWER

            Answered 2020-Dec-03 at 17:13

            When you call assertWarns(UserWarning, checking_aad_local_groups(...)) then you are calling checking_aad_local_groups and passing the result to assertWarns. You want to give assertWarns a callable so that it can wrap it in the warning detection code.

            Source https://stackoverflow.com/questions/65130533

            QUESTION

            Checking if list elements are in string index list
            Asked 2020-Nov-30 at 11:51

            I have two lists, which ones I want to compare their elements:

            A remote list called groups

            ...

            ANSWER

            Answered 2020-Nov-30 at 11:43

            I think you want to find group names that exist in one list but not two lists.

            So here is my solution:

            Source https://stackoverflow.com/questions/65072680

            QUESTION

            SDL2 transparent background
            Asked 2020-Jun-25 at 14:54

            I'm trying to create a .PNG image from a larger .PNG image. Basically clip a rect area of the original and save the result as another .PNG Sort of like a texture unpacker, if you will.

            My issue is that the portions that were transparent in the original image are colored in the clipped image.

            Initially I used hardware acceleration and the background was white with speckles, switching to software renderer just changed the background to Black.

            I would like to maintain the transparency of the original image.

            ...

            ANSWER

            Answered 2020-Jun-25 at 14:54

            There are two problems:

            1. Disable blending. Use SDL_SetTextureBlendMode(source, SDL_BLENDMODE_NONE); before RenderCopy, otherwise you'll get wrong colour (blended with default black - result would be darker than it shound be). Blending tied to texture so if you want to use this texture later you probably should reset blending mode right away. See SDL_SetTextureBlendMode doc for formulas used in different blend modes.

            2. Your resulting surface don't have alpha channel so there is nowhere to copy result. Check documentation for SDL_CreateRGBSurface: while it allows to use 0 for colour masks to deduce default values, it explicitly don't allow it for alpha channel, so 0 in place of amask results in "I don't want alpha channel, just RGB". Your resulting format is RGB888 packed to 32bit. You want alpha, so you should use correct colour masks - get one from docs, in your case you don't even need to check for endianess, but it never hurts.

            To sum it up:

            Source https://stackoverflow.com/questions/62574701

            QUESTION

            Computing White Speckle Metric in a Document Image
            Asked 2020-Jun-09 at 18:45

            The paper 'Metric-based No-reference Quality Assessment of Heterogeneous Document Images', discusses about measuring the quality of characters in a document image. I'm having difficulty to understand the white speckle metric in page 7.

            Small white speckle measures how much fattened character strokes have shrunken existing white connected components inside characters, or have created new ones by connecting strokes of characters. A histogram of white connected components in a document image is computed, and we have already found the most frequent font size.Then the white speckle is computed by summing up the histogram bins between 1 pixel and 1% of font size squared. The sum is then normalized by dividing by the area under the histogram between 1 and font size squared.

            My questions are:

            1. How a histogram of white connected components in a document image is computed?
            2. How a white speckle is computed by summing up the histogram bins between 1 pixel and 1% of font size squared? Lets say for example, the most frequent font size is 32, so I have to sum up the frequencies from histogram bin 1 to one percent of 32^2 (1024)? Is that right?
            3. Honestly, I dont see any relation of computing or summing up the histogram bins between 1 pixel and 1% of font size squared to the small white speckle measure. Can you help me see the relation?

            Thanks.

            ...

            ANSWER

            Answered 2020-Jun-09 at 18:45

            I did't read the entire paper but it think i understand what they are doing.

            The document is composed from black charters on a white background a binary image(I don't know how exactly they threshold the image but i think this is the input). Inside those charters there are some small white areas.

            1. Calculate the connected component in the image. Lets say you have N of them in the document. Each one of the connected component has a size, the number of pixels the component have. Using the size of the component we can create an histogram which counts the number of components with size 1, 2, ....
            2. We are looking for speckles inside charters. The paper defines a small speckle to be a connected component with size of 1 pixel til 1% of the most frequent charter area. The charter area is the font size squared. So you are correct when you state that you will be summing all the bins between 1 and one percent of 32^2

            3. They define a small speckle to be a connected component with some small size and specially a size which is equal to 1% of the font size squared. In order to measure how much of speckles you have in a document you just sum all of those connected component that fall into this definition. At the end you normalized it so you have a measurement that can be compared between different documents.

            You can disagree with there assumption and think maybe a small speckle should be define entirely different but this was there definition.

            Hope i helped a little bit

            Source https://stackoverflow.com/questions/62259082

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            You can download it from GitHub.

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