MESO | USER-MESO package for LAMMPS | GPU library

 by   yhtang C++ Version: Current License: GPL-3.0

kandi X-RAY | MESO Summary

kandi X-RAY | MESO Summary

MESO is a C++ library typically used in Hardware, GPU applications. MESO has no bugs, it has no vulnerabilities, it has a Strong Copyleft License and it has low support. You can download it from GitHub.

The USERMESO package of LAMMPS is a fully GPU-accelerated package for Dissipative Particle Dynamics. Instead of being merely a translation of the conventional molecular dynamics, the package integrates several innovations that specifically targets CUDA devices. It can achieve tens of times speedup on a single CUDA GPU over 8-16 CPU cores. The work is featured by a NVIDIA Parallel Forall blog article Accelerating Dissipative Particle Dynamics Simulation on Tesla GPUs.
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            kandi-support Support

              MESO has a low active ecosystem.
              It has 9 star(s) with 7 fork(s). There are 7 watchers for this library.
              OutlinedDot
              It had no major release in the last 6 months.
              There are 0 open issues and 1 have been closed. On average issues are closed in 4 days. There are no pull requests.
              It has a neutral sentiment in the developer community.
              The latest version of MESO is current.

            kandi-Quality Quality

              MESO has no bugs reported.

            kandi-Security Security

              MESO has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

            kandi-License License

              MESO is licensed under the GPL-3.0 License. This license is Strong Copyleft.
              Strong Copyleft licenses enforce sharing, and you can use them when creating open source projects.

            kandi-Reuse Reuse

              MESO releases are not available. You will need to build from source code and install.
              Installation instructions are not available. Examples and code snippets are available.

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            MESO Key Features

            No Key Features are available at this moment for MESO.

            MESO Examples and Code Snippets

            No Code Snippets are available at this moment for MESO.

            Community Discussions

            QUESTION

            Keep corresponding rownames when aggregating dataframe rows by column element
            Asked 2021-May-27 at 17:42

            I have a dataframe Df with some rows that have repeated elements on column A and B

            ...

            ANSWER

            Answered 2021-May-27 at 17:05

            The below should do the trick:

            Source https://stackoverflow.com/questions/67725006

            QUESTION

            Apache Mesos/Chronos task status is not getting updated and stuck as RUNNING status
            Asked 2021-Feb-23 at 04:41

            I am using Mesos 1.3.1 and Chronos in my local. I currently have 100 jobs scheduled every 30 minutes for testing.

            Sometimes the tasks get stuck in RUNNING status forever until I restart the Mesos agent that the task is stuck. No agent restarted during this time.

            I have tried to KILL the task but its status never gets updated to KILLED while the logs in Chronos say that successfully received the request. I have checked in Chronos that it did update the task as successful and end time is also correct but duration is ongoing and the task is still in RUNNING state.

            Also the executor container is running forever for the task that are stuck. I have the executor container that will sleep for 20 seconds and set the offer_timeout to 30 seconds and executor_registration_timeout to 2 minutes.

            I have also included Mesos reconciliation every 10 minutes but it updates the task as RUNNING every time.

            I have also tried to force the task status to update again as FINISHED before the reconciliation but still not getting updated as FINISHED. It seems like the Mesos leader is not picking up the correct status for the stuck task.

            I have tried to run with different task resource allocations (cpu: 0.5,0.75,1...) but does not solve the issue. I changed the number of jobs to 70 for every 30 minute but still happening. This issue is seen once per day which is very random and can happen to any job.

            How can I remove this stuck task from the active tasks without restarting the Mesos agent? Is there a way to prevent this issue from happening?

            ...

            ANSWER

            Answered 2021-Feb-23 at 04:41

            Currently there is a known issue in Docker in Linux where the process exited but docker container is still running. https://github.com/docker/for-linux/issues/779

            Because of this, the executor containers are stuck in running state and Mesos is unable to update the task status.

            My issue was similar to this: https://issues.apache.org/jira/browse/MESOS-9501?focusedCommentId=16806707&page=com.atlassian.jira.plugin.system.issuetabpanels%3Acomment-tabpanel#comment-16806707

            The fix for the work around has been applied after 1.4.3 version. After upgrading the Mesos version this does not occur anymore.

            Source https://stackoverflow.com/questions/66124960

            QUESTION

            Mesos implementation
            Asked 2021-Feb-16 at 13:42

            I have two Django websites that create a Spark Session to a Cluster which is running on Mesos.

            The problem is that whatever Django starts first will create a framework and take 100% the resources permanently, it grabs them and doesn't let them go even if idle.

            I am lost on how to make the two frameworks use only the neede resources and have them concurrently access the Spark cluster.

            Looked into spark schedulres, dynamic resources for spark and mesos but nothing seems to work. Is it even possible or should I change the approach?

            ...

            ANSWER

            Answered 2021-Feb-16 at 13:42

            Self solved using dynamic allocation.

            Source https://stackoverflow.com/questions/65718966

            QUESTION

            Running 1000 functions gracefully using python multi-processing
            Asked 2021-Feb-01 at 15:16

            I'm trying to receive stock data for about 1000 stocks, to speed up the process I'm using multiprocessing, unfortunately due to the large amount of stock data I'm trying to receive python as a whole just crashes.

            Is there a way to use multiprocessing without python crashing, I understand it would still take some time to do all of the 1000 stocks, but all I need is to do this process as fast as possible.

            ...

            ANSWER

            Answered 2021-Jan-31 at 19:18

            Ok, here is one way to obtain what you want in about 2min. Some tickers are bad, that's why it crashes.

            Here's the code. I use joblib for threading or multiprocess since it doesn't work in my env. But, that's the spirit.

            Source https://stackoverflow.com/questions/65980910

            QUESTION

            Exception in thread "main" org.apache.spark.SparkException with local run in spark
            Asked 2021-Jan-08 at 11:09

            I try to run my code written in main2.py

            ...

            ANSWER

            Answered 2021-Jan-08 at 11:09

            No need for two dashes before local[1]:

            Source https://stackoverflow.com/questions/65627330

            QUESTION

            can't get the first nested order list html
            Asked 2020-Oct-01 at 13:48

            So I've tried looking for the answers on this website and Google. I swear I have the right idea to "close" off each ordered list accordingly:

            ...

            ANSWER

            Answered 2020-Oct-01 at 05:15

            Try out the below updated code. I have reorder your ol and li outside div.

            Source https://stackoverflow.com/questions/64149130

            QUESTION

            Spark Mesos cluster setting a wrong route for spark-class in executors
            Asked 2020-Sep-03 at 19:48

            I have a flask API that using pyspark starts spark and sends the job to a mesos cluster.

            The executor fails because it's taking part of the route where spark-class is located in the Flask API.

            Logs:

            ...

            ANSWER

            Answered 2020-Sep-03 at 19:48

            Solved by adding the path where the spark is located in executor by adding this property pointing at the binaries of Spark:

            Source https://stackoverflow.com/questions/63724953

            QUESTION

            Modifying number of tasks executed on mesos slave
            Asked 2020-Sep-03 at 15:15

            In a Mesos ecosystem(master + scheduler + slave), with the master executing tasks on the slaves, is there a configuration that allows modifying number of tasks executed on each slave?

            Say for example, currently a mesos master runs 4 tasks on one of the slaves(each task is using 1 cpu). Now, we have 4 slaves(4 cores each) and except for this one slave the other three are not being used.
            So, instead of this execution scenario, I'd rather prefer the master running 1 task on each of the 4 slaves.

            I found this stackoverflow question and these configurations relevant to this case, but still not clear on how to use the --isolation=VALUE or --resources=VALUE configuration here.

            Thanks for the help!

            ...

            ANSWER

            Answered 2020-Sep-03 at 15:15

            Was able to reduce number of tasks being executed on a single host at a time by adding the following properties to startup script for mesos agent.
            --resources="cpus:<>" and --cgroups_enable_cfs=true.

            This however does not take care of the concurrent scheduling issue where the requirement is to have each agent executing a task at the same time. For that need to look into the scheduler code as also suggested above.

            Source https://stackoverflow.com/questions/63386338

            QUESTION

            Can't access Mesos UI
            Asked 2020-Sep-02 at 17:55

            Can't access Mesos UI on the master:5050.

            Running a small cluster 1 master-3 slaves on a Linux dist.

            Master seems to be picked OK:

            ...

            ANSWER

            Answered 2020-Sep-02 at 17:55

            The command was being launched with the command --port=5000, a bit confused because apparently this is the port the slaves listes to according to this definition from this page:

            Source https://stackoverflow.com/questions/63703138

            QUESTION

            Python Scrapy - scraping dt and dd values
            Asked 2020-Aug-11 at 03:04

            I am trying to obtain all data inside dt/dd table structure on a website.

            My current code looks like this:

            ...

            ANSWER

            Answered 2020-Aug-10 at 07:34

            I'm not sure what do you want but this will return a single item with ALL fields:

            Source https://stackoverflow.com/questions/63331538

            Community Discussions, Code Snippets contain sources that include Stack Exchange Network

            Vulnerabilities

            No vulnerabilities reported

            Install MESO

            You can download it from GitHub.

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          • HTTPS

            https://github.com/yhtang/MESO.git

          • CLI

            gh repo clone yhtang/MESO

          • sshUrl

            git@github.com:yhtang/MESO.git

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