easel | Sequence analysis library used by Eddy/Rivas lab code

 by   EddyRivasLab C Version: Bio-Easel-0.16 License: Non-SPDX

kandi X-RAY | easel Summary

kandi X-RAY | easel Summary

easel is a C library. easel has no bugs, it has no vulnerabilities and it has low support. However easel has a Non-SPDX License. You can download it from GitHub.

Easel is an ANSI C code library developed by the Eddy/Rivas laboratory at Harvard. Easel supports our work on computational analysis of biological sequences using probabilistic models. Easel is used by HMMER, the profile hidden Markov model software that underlies several protein and DNA sequence family databases such as Pfam, and by Infernal, the profile stochastic context-free grammar software that underlies the Rfam RNA family database. Easel aims to make similar applications more robust and easier to develop, by providing a set of reusable, documented, and well-tested functions. Easel is not (yet) released on its own. It is part of the HMMER and Infernal releases. To participate in Easel development, visit us at github.
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              easel has a low active ecosystem.
              It has 39 star(s) with 26 fork(s). There are 13 watchers for this library.
              OutlinedDot
              It had no major release in the last 6 months.
              There are 1 open issues and 36 have been closed. On average issues are closed in 105 days. There are 1 open pull requests and 0 closed requests.
              It has a neutral sentiment in the developer community.
              The latest version of easel is Bio-Easel-0.16

            kandi-Quality Quality

              easel has no bugs reported.

            kandi-Security Security

              easel has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

            kandi-License License

              easel has a Non-SPDX License.
              Non-SPDX licenses can be open source with a non SPDX compliant license, or non open source licenses, and you need to review them closely before use.

            kandi-Reuse Reuse

              easel releases are not available. You will need to build from source code and install.
              Installation instructions, examples and code snippets are available.

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            easel Key Features

            No Key Features are available at this moment for easel.

            easel Examples and Code Snippets

            No Code Snippets are available at this moment for easel.

            Community Discussions

            QUESTION

            how to put div next to each other properly in css?
            Asked 2020-Jan-12 at 05:08

            I have 6 cards div showing in rows using Materialize library. But for some reason I cannot make the cards something like this, shown below: x x x x x x So, can anyone help me make it work, am I stuck with the materialize css or can I override it? thanks for the help. All I need to put is 3 divs on top and the other 3 under. So, 2 rows.

            here is my code:

            ...

            ANSWER

            Answered 2020-Jan-12 at 05:08

            I hope this what u r expecting:

            use col s12 m4 class.

            Source https://stackoverflow.com/questions/59701009

            QUESTION

            Trying to save values from tkInter scale
            Asked 2020-Jan-12 at 02:14

            This is my first post so please have patience

            I've got a school assignment to create an art supplies application and I've drawn a blank why my tkinter scale values are not saving to a file.

            The customer details and submit button code works as expected (saves to a file = info.txt) The Order tab page doesn't work as expected = does not append info.txt with specific quantities of art supplies ordered

            Here's my code

            ...

            ANSWER

            Answered 2020-Jan-12 at 02:14

            It looks like your problem is one of variable names. You are clobbering the scale object with the result of a call to get(), but then you write to what I assume was the variable you intended to assign. That variable is never initialized and is therefore None, so nothing is written to the file. e.g.

            Source https://stackoverflow.com/questions/59698877

            QUESTION

            How to scale an SVG without losing contours in Easel.js?
            Asked 2019-Apr-16 at 15:16

            I have an Easel.js-based canvas and a bunch of SVGs. When I put these SVGs on canvas as vector shapes and try to scale the whole canvas, some SVG contours become distorted / blurred.

            Are there any ways to avoid such a behavior?

            Problem:

            SVG sample: http://s000.tinyupload.com/index.php?file_id=88515840051764837348

            ...

            ANSWER

            Answered 2019-Apr-16 at 15:16

            EaselJS support in canvas is restricted to image-based rendering. Basically, it loads the SVG as a raster image. When you scale it, you aren't seeing it redraw the vector, but instead it scales like an image would. If you scale it above 100% it should be more obvious (it will get pixelly/blurry).

            Not sure if you can work around this with an SVG source. You could bring paths into Adobe Animate, and export as raw EaselJS Graphics, which will scale more predictably.

            Cheers,

            Source https://stackoverflow.com/questions/55705785

            QUESTION

            Need help modifying a Wordpress plugin. I just need to know how to remove or replace last 4 characters from a PHP string?
            Asked 2019-Apr-06 at 19:20

            My problem is I'm trying modifying a Wordpress plugin (Comic Easel) without complete knowhow of PHP. Anyway, what I wanted to do is make mobile/vertical versions of my comic strip (cause mine is in horizontal format), so I made alternate versions of the comic images, say http://example.com/comic1m.jpg

            Now here's the code:

            ...

            ANSWER

            Answered 2019-Apr-06 at 18:02

            You could match the dot and the extension (1+ word characters using \w+ or jpg exactly) at the end of the string.

            Then you might use preg_replace and replace with m$0 where $0 refers to the full match.

            Source https://stackoverflow.com/questions/55551842

            QUESTION

            Why does an error occur in expressing data within the Alert.alert() function?
            Asked 2019-Jan-23 at 01:19
            I'd like to put a title in the Alert.alert() and display the data under the title.
            • I'd appreciate it if you could tell me where the problem is and how to solve it.
            ...

            ANSWER

            Answered 2019-Jan-22 at 09:01

            You don't need to access the this.state.data inside your showAlert function you could actually pass the item to the function and use that. I would update your showAlert function to the following

            Source https://stackoverflow.com/questions/54300224

            QUESTION

            Trying to fit picture and text in one flexbox container, text is below container, not going in trying to put in and make responsive
            Asked 2018-Aug-14 at 10:21

            I am trying to fit this text next to the picture and have them both resize and then stack on top of each other as they get smaller. What am I doing wrong? Any help would be great. Here is my CodePen: Flexbox Container Text and Image

            ...

            ANSWER

            Answered 2018-Aug-14 at 10:21

            I changed the markup a little so .who-wrapper only contains the text and got rid of the display:grid on .who-container

            Source https://stackoverflow.com/questions/51731745

            QUESTION

            jQuery / HTML - execute existing a-z jQuery filter (of a specific letter) on page load, based on ID/# in URL
            Asked 2018-Jul-19 at 03:54

            Is it possible on page load to assign an active class based on the bookmark ID/#value in the page URL, to then execute an existing jQuery filter function?

            For example http://localhost/mypage.html#az-a thens execute the letter 'A' filter.

            HTML:

            ...

            ANSWER

            Answered 2018-Jul-19 at 03:50

            Use window.location.hash to get the hash value from the url then use it as selector to match the id of the letter anchor

            Something like:

            Source https://stackoverflow.com/questions/51413979

            QUESTION

            jQuery / HTML - add a no results message when alphabetical filter is applied
            Asked 2018-Jul-18 at 02:31

            Have adapted the jQuery code from this previous question (Need to show All option is Letter-based Navigation using jQuery) to create an A-Z filter like so:

            HTML:

            ...

            ANSWER

            Answered 2018-Jul-18 at 02:30

            You can add an extra li to the ul and show/hide based on condition. HTML:

            Source https://stackoverflow.com/questions/51392654

            QUESTION

            How to create a hover drop down menu nav bar asp.net
            Asked 2018-Feb-23 at 04:24

            I have managed to create a navigation bar that highlights when it is hovered over, but I have not been able to manage to make it a hover drop down list. Is there any way of making this possible? this is the current code that I am using.

            ...

            ANSWER

            Answered 2018-Feb-23 at 04:24

            Edit: To further elaborate on where the below should go, and since we are talking about webforms here, you should open the Site.Master page.

            In the Site.Master Page: If you have left the default code that Visual Studio builds in, you should see the following lines between the tags:

            Source https://stackoverflow.com/questions/48842549

            QUESTION

            Tween rotation in Easeljs: Control direction of rotation
            Asked 2017-Dec-28 at 10:21

            I have some shapes on the stage. Some of them I want to tween rotate clockwise, some counterclockwise.

            The rotation property for objects in Easel.js runs from 0 to 360 (I think). So...if I want to tween the rotation of an object counterclockwise from 45 degrees to -45 degrees...a change of 90 degrees...how do I do that?

            Thanks in advance. Roger.

            ...

            ANSWER

            Answered 2017-Jul-24 at 01:45

            Normally, TweenJS tweens rotation the same as any other number: * If you go from 45 to -45, it will rotate counter-clockwise * If you go from 45 to 300, it will rotate clockwise

            You can use the SmartRotation plugin with the latest tagged version of TweenJS in the CDN (0.6.2) to ensure it rotates the "shortest" distance, so in the second example above, it will rotate counter-clockwise instead. You can find it in the "plugins" directory.

            However, a better option is to use the latest TweenJS NEXT version (yet to be released on the CDN), where you can use the RotationPlugin (in src/tweenjs/plugins), which has the same "shortest distance" behaviour as the old SmartRotation plugin, but also the ability to set the rotation direction per to() call:

            Source https://stackoverflow.com/questions/45270488

            Community Discussions, Code Snippets contain sources that include Stack Exchange Network

            Vulnerabilities

            No vulnerabilities reported

            Install easel

            This procedure gives you our master branch - the most recent Easel release that was packaged with a release of HMMER, Infernal, or other lab software. If you want a feature that we've put in more recently, you want our develop branch. After the git clone and cd easel, do:. and proceed to autoconf.

            Support

            For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .
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          • HTTPS

            https://github.com/EddyRivasLab/easel.git

          • CLI

            gh repo clone EddyRivasLab/easel

          • sshUrl

            git@github.com:EddyRivasLab/easel.git

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