processx | Execute and Control Subprocesses from R | Monitoring library

 by   r-lib C Version: v3.8.1 License: Non-SPDX

kandi X-RAY | processx Summary

kandi X-RAY | processx Summary

processx is a C library typically used in Performance Management, Monitoring, Nodejs, MongoDB applications. processx has no bugs, it has no vulnerabilities and it has low support. However processx has a Non-SPDX License. You can download it from GitHub.

Execute and Control System Processes. Tools to run system processes in the background, read their standard output and error and kill them. processx can poll the standard output and error of a single process, or multiple processes, using the operating system’s polling and waiting facilities, with a timeout.
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              processx has a low active ecosystem.
              It has 217 star(s) with 41 fork(s). There are 7 watchers for this library.
              OutlinedDot
              It had no major release in the last 12 months.
              There are 15 open issues and 237 have been closed. On average issues are closed in 60 days. There are 6 open pull requests and 0 closed requests.
              It has a neutral sentiment in the developer community.
              The latest version of processx is v3.8.1

            kandi-Quality Quality

              processx has 0 bugs and 0 code smells.

            kandi-Security Security

              processx has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.
              processx code analysis shows 0 unresolved vulnerabilities.
              There are 0 security hotspots that need review.

            kandi-License License

              processx has a Non-SPDX License.
              Non-SPDX licenses can be open source with a non SPDX compliant license, or non open source licenses, and you need to review them closely before use.

            kandi-Reuse Reuse

              processx releases are available to install and integrate.
              Installation instructions, examples and code snippets are available.

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            processx Key Features

            No Key Features are available at this moment for processx.

            processx Examples and Code Snippets

            No Code Snippets are available at this moment for processx.

            Community Discussions

            QUESTION

            Is it possible to constrain plot_ly axis to certain proportions of the plot?
            Asked 2021-Dec-02 at 18:48

            I am plotting two different types of data in r on the same x axis with the plot_ly library. I have two independent y axes. The data here is a quick mockup to represent the dataset with which I am working. I have a family of explanatory variables (i.e. actuals 1-10), their coefficients, and the normalized amount of times they appeared in a fictitious model, and NA values to pad the vectors in order to make data-frames:

            ...

            ANSWER

            Answered 2021-Dec-02 at 18:48

            In short, the answer so far is no. Thanks to @neuron for their work going through ggplotly and ruling that approach out.

            However, with some better range calculations and replacing the NA values with 0, it is possible to use the range=c() argument in layout() to ensure all the scatter points are not occluded by the bars. I tested this on the data set above as well as my actual data and it worked in all 696 cases.

            Source https://stackoverflow.com/questions/70188398

            QUESTION

            How to address broken dual y-axis plot output from r plot_ly subplotting?
            Asked 2021-Dec-01 at 14:56

            I am plotting 4 plot_ly plots on the same "page" with the subplot function in the plot_ly library. The data here is a quick mockup to represent the dataset with which I am working. I have 4 families of explanatory variables (i.e. actuals 1-10, bias 25,50,70,100), their coefficients, and the normalized amount of times they appeared in a fictitious model, and NA values to pad the vectors in order to make data-frames:

            ...

            ANSWER

            Answered 2021-Nov-30 at 22:11

            Turns out this is a known bug with a workaround posted on GitHub here:

            https://github.com/plotly/plotly.R/issues/954#issuecomment-453872899

            Source https://stackoverflow.com/questions/70174276

            QUESTION

            ggplot2 png file without background
            Asked 2021-Nov-11 at 14:11

            Since a few months, ggplot2 started to save png files with a transparent background. The code output in Rstudio and when saved as pdf looks great. It happens mainly with the use of themes when I omit the gray panel background. I tested it on my macbook with "Preview" and on a Windows Computer with the "foto viewer" there.

            ...

            ANSWER

            Answered 2021-Nov-11 at 14:11

            Maybe indeed worth an answer for posterity...

            Specify ggsave("test.png", dpi = 300, bg = "white")

            Background (pun intended): the argument will be passed to grDevices::png via the ... argument. bg controls the background of the device.

            Source https://stackoverflow.com/questions/69928739

            QUESTION

            Cannot modify Process DACL that I own with my code but Process Hacker can
            Asked 2021-Oct-22 at 15:02

            I have a process (let's call it ProcessX) that runs by default with only Terminate, Synchronize, and Query Limited Information permissions.

            When I look at ProcessX in Process Hacker, I can see the permission (ACE, Owner, etc). I can see that I'm the owner of ProcessX, I can see the 3 limited permissions associated with it (Terminate, Synchronize, and Query Limited Information), and I can even edit the permissions (for instance, set Full Control on it).

            However, when I run the code below to check the DACL of ProcessX, with the same user that owns ProcessX, I'm getting an error code 5 (Access Denied) on the GetSecurityInfo() function.

            Same results with AccessChk and Process Explorer on ProcessX.

            However, Process Hacker is perfectly able to read the DACL of ProcessX and modify it.

            I don't understand. How is that possible? Why is my code unable to read the DACL for ProcessX?

            I've read in MS documents that to read the DACL, I must use OpenProcess() with READ_CONTROL.

            But READ_CONTROL is not an available ACE on the process for my user. So, I can't open the process with it (OpenProcess() errors if I try, which is logical).

            So, I'm the owner of the process, but I can't modify the ACE, but Process Hacker can.

            Can anybody help me understand?

            ...

            ANSWER

            Answered 2021-Oct-22 at 15:02

            Problem solved !

            I've assumed that READ_CONTROL will be refused because it wasn't available on the DACL of the running process.

            Turns out, when you own an object, you have implicit READ_CONTROL and WRITE_DAC permission on it, even if zero ACE are set on the object for the user owning it.

            Source https://stackoverflow.com/questions/69648232

            QUESTION

            Read from character vector CSV to tibble in R
            Asked 2021-Oct-21 at 20:31

            TL;DR I’m wondering if readr or tibble or anything base/tidyverse can make a tibble from a character vector of CSV rows (as if I had done read_lines() on some CSV file).

            More explanation: I am collecting output (from stdout of a processx object) into a character vector, and this output is actually lines of a CSV, being created by the subprocess. I would like to make this into a tibble, but the only function I can find that does this is data.table::fread (via the ‘text’ arg). This is in a package and I don’t really want to take a dependency on data.table solely for this one function.

            I’ve looked through the tidyverse docs and I can’t find anything. I realize I could write my own parser, and I started doing it with map_def and str_split but then I realized there are subtleties like “ignore the comma if it’s within quotes”, etc. maybe I’m just being lazy, but I don’t really want to implement a full csv parser when there are millions that already exist. Not to mention, speed concerns. This vector is sometimes 10k+ rows and I’m sure my homemade approach would not be the most optimized.

            Any thoughts are welcome. Maybe I should just bite the bullet and either write the parser or use data.table but I feel like I can’t be the first person to want to do this and there must be something g built in that I’m missing. Thanks!

            ...

            ANSWER

            Answered 2021-Oct-20 at 13:12

            Does read.csv not work?

            Source https://stackoverflow.com/questions/69646566

            QUESTION

            Error trying to install Rling package in R #2
            Asked 2021-Oct-08 at 12:12

            I tried to install a companion R package called Rling from this website https://benjamins.com/sites/z.195/content/package.html. In vain. There was an answer to the same question before Error trying to install Rling package in R. So I installed devtools with no problem. Then I used devtools::install_local to install Rling:

            ...

            ANSWER

            Answered 2021-Oct-08 at 12:12

            processx is a package on CRAN: https://cran.r-project.org/web/packages/processx/index.html

            It was updated in March 2021 to version 3.5.0 and in April to 3.5.1. The error message suggests to update as in

            Source https://stackoverflow.com/questions/69495190

            QUESTION

            How does one terminate all processes upon Shiny app end?
            Asked 2021-Sep-29 at 12:10

            I am using Shiny with a local server installed.

            My Shiny app runs a heavy local program using system/system2/processx::run. I am running it synchronously (wait=T). If the user closes the browser window of the Shiny, I would love the heavy program to end. If the user re-opens the browser window, I want the Shiny app to be ready again for executing the local program.

            How can this be achieved?

            When I use system/system2/processx::run, it seems that the app waits for the heavy program to finish and does not stop it upon close.

            Reprex:

            ...

            ANSWER

            Answered 2021-Sep-29 at 12:10

            @PorkChop's comment is pointing in the right direction. However, I'd recommend using processx::process rather than run as it provides us with methods to control the started process from within R. See ?process. (run by the way is also based on the process class.)

            The main problem here is, that running the process synchronously (wait=TRUE) blocks the R session. Accordingly onStop won't fire until R is back in control. Therefore you can't trigger anything once the browser window was closed because the shiny-session continues to run until the external program is finished and R can close the shiny-session.

            On session end, the below code checks if the asynchronously started process is still alive and kills it if necessary (tested on windows only).

            Source https://stackoverflow.com/questions/69284607

            QUESTION

            Using reactivity (in Shiny) from a function
            Asked 2021-Sep-27 at 09:50

            I am writing a function for my app that will call a process in the background, and monitor the moment it stops. Upon closing the session, the process should be killed, so I want it to be available outside of the function. If I assign the process with the <<- sign, something strange happens...

            ...

            ANSWER

            Answered 2021-Sep-27 at 09:50

            The problem is that everytime you call runAsync() you add a new observeEvent call, a quick fix would be to introduce a reactive value that checks if the function was already called and then do not add a new observeEvent as shown in that example:

            Source https://stackoverflow.com/questions/69342809

            QUESTION

            SVM prediction running fine in my computer but not in R Connect
            Asked 2021-Aug-06 at 04:41

            I’m creating a Shiny app that uses the caret package to do some SVM free-text analysis.

            The app runs fine without any error in my computer. I’m using R x64 4.0.4 and R studio 1.3.1093

            I’m deploying app to an internal enterprise server https://rconnect.xxxx.com/connect/#/apps/####

            This app is deployed in the server and started.
            But when I reach the line where I run the train function:

            ...

            ANSWER

            Answered 2021-Aug-05 at 01:15

            Errors like this in Shiny apps are almost always a result of missing packages, which the logs confirm.

            Turns out in this case I think the missing package is kernlab, which I only found by reading the documentation given here: https://topepo.github.io/caret/train-models-by-tag.html#Support_Vector_Machines. It's a suggested package, not imported, so the command suggested in the comments by heds1 would sort this out.

            Source https://stackoverflow.com/questions/68659043

            QUESTION

            R Unable to Install Packages From GitHub (System Error 267 @win/processx.c:1040)
            Asked 2021-Jul-16 at 11:39
            TL;DR

            Unable to install any package from GitHub, System Error 267

            I've newly setup R (v4.1), Rstudio and just installed devtools. I also additionally installed Rtools40 and added it to my path (global environment)

            Rtools seems to work properly as validated with: Sys.which("make") & maketools::rtools_find() (output below)

            Problem

            I am unable to install any package from GitHub, e.g. rstudio/gt. The error is nearly identical for any GitHub Package, allways stating system error 267

            ...

            ANSWER

            Answered 2021-Jul-16 at 11:39

            The standalone mode of the remotes package solved the issue for me, as suggested by the maintainer of processx (Gábor Csárdi) here

            devtools::install_github() only calls remotes::install_github().
            However, for the remotes, there is the option to be exectued in standalone mode

            Source: Cran

            Standalone mode

            remotes will use the curl, git2r and pkgbuild packages if they are installed to provide faster implementations for some aspects of the install process. However if you are using remotes to install or update these packages (or their reverse dependencies) using them during installation may fail (particularly on Windows).

            If you set the environment variable R_REMOTES_STANDALONE="true" (e.g. in R Sys.setenv(R_REMOTES_STANDALONE="true")) you can force remotes to operate in standalone mode and use only its internal R implementations. This will allow successful installation of these packages

            With the following lines of code, gt was finally successfull installed from github.

            Source https://stackoverflow.com/questions/68400661

            Community Discussions, Code Snippets contain sources that include Stack Exchange Network

            Vulnerabilities

            No vulnerabilities reported

            Install processx

            Install the stable version from CRAN:.

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            For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .
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