lgamma | Implementations of polygamma , lgamma , and beta functions | GPU library
kandi X-RAY | lgamma Summary
kandi X-RAY | lgamma Summary
Implementations of polygamma, lgamma, and beta functions for PyTorch. It's very hacky, but that's usually ok for research use. You'll probably need to pass in the correct CUDA path to build.py, which is run inside make.sh, so modify it to instead call.
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QUESTION
I'm trying to compare the value of the log likelihood function given by the logLik function and the value calculate by hand for a Gamma distribution. The value given by the logLik function is:
...ANSWER
Answered 2020-Dec-30 at 15:15You've interverted scale and shape and there's a couple of sign errors in your code.
QUESTION
A similar question in How to write a double for loop in r with choosing maximal element in one loop?.
The same setup:
If I want to sample theta[j] as first for j=1,2,...,71, then draw replicated( like 1000 times) yrep[k] form Bin(n[j], theta[j]), n[j] is known.
For theta[1], we have yrep[1,1], yrep[1,2], ..., yrep[1,1000]. Then for all theta[j], we will have a matrix of data set of yrep[i,j], i=1,...,71, j=1,..,1000.Then compute mean, max or min of each column yrep[1,1], yrep[1,2], yrep[1,3], ... yrep[1,71], we will get 1000 mean, max or min.
How to write this for loop?
I first try to write a loop to sample theta[j] and yrep. I do not know how to add a code to compute the maximal, mean, and minimal in this loop. I am not sure if this code is right:
...ANSWER
Answered 2020-Oct-17 at 09:33This is not very well tested.
There is no need for loops to sample from distributions included in base R, those functions are vectorized on their arguments. Code following the lines below should be able to do what the question asks for.
QUESTION
I want to sample theta[j] as first for j=1,2,...,71, then draw replicated( like 1000 times) yrep[k] form Bin(n[j], theta[j]), n[j] is known.
Then for each theta[j], I have 1000 yrep. If I want to choose the maximal element among this 1000 yrep. Finally, I will have 71 maximal elements.
My for loop in R is as follows:
...ANSWER
Answered 2020-Oct-16 at 14:28You should provide us some data to work with, i didn't got to test it but i think this works:
QUESTION
I'm new to GNU and I've been trying to compile a package using Autotools on Mac. After executing the command ./configure
, I get the following:
ANSWER
Answered 2020-Jun-30 at 18:05Maybe some files in your system should have been converted from using Windows line endings CRNL to using POSIX line endings NL? The extra CR character is causing the cursor to go back to the beginning of the line without a newline, and it's causing the name of your file to be MakefileCR (or, Makefile\r
) rather than just Makefile. Obviously the file named Makefile\r.in
does not exist.
QUESTION
I tried asking this question before and rightfully was informed I need to provide a fully working example so others can reproduce my result and then give guidance.
Here is a shortened version of my code for parsing the file. The point of readFileToStrings
is to save the file into seperate strings based on the patterns [Atoms]
, [GTO]
, and [MO]
.
ANSWER
Answered 2020-Jun-25 at 22:20There is an issue here:
QUESTION
I am parsing through individual lines of code in R
to get a better understanding of a large function. While I know sapply
apples a function over a vector, I am having trouble understanding what it is doing in a specific instance. Unfortunately, I cannot find a clear explanation on this exact question elsewhere.
If you simulate data with the sample below code, the variable Y
is a vector with 2000 values and calc_sizes
is the number of unique values in Y (87 unique values). When sapply
is applied to likelihoods
it is done in the context of likelihoods[calc_sizes]<-sapply(calc_sizes, nb.likelihood)
. This returns a vector of 688 values
What is sapply
doing here, and how/why does it return a vector of 688 and not 87?
To be clear, the code is functioning properly - there is no technical issue. I would just prefer to understand and learn as opposed to blindly writing code that eventually worked (and so I don't have to bug this forum so often).
You should be able to copy and paste the code verbatim to get the results mentioned. Thank you for any insight!
...ANSWER
Answered 2019-Dec-13 at 20:50When you do likelihoods[calc_sizes] <- sapply(calc_sizes, nb.likelihood)
you are saving the results of sapply(calc_sizes, nb.likelihood)
into the vector likelihoods
on the positions calc_sizes
.
Since calc_sizes
values goes from 1 to 688, R transform likelihoods
into a 688 length vector. But if you run table(is.na(calc_sizes))
you will see only 87 positions are not missing.
QUESTION
I'm trying to use bootstrapping to calculate the confidence interval of MLE of parameter v. But in every iteration, optim()
gives me the same result. Why is this happenning?
Here's my code:
...ANSWER
Answered 2019-Nov-10 at 02:11> dofloglik = function(v, x) { n <- length(x)
+ loglik <- n*lgamma((v+1)/2) - n*lgamma(v/2)
+ - (n/2)*log(v*pi) - ((v+1)/2)*sum(log(1+x^2/v))
+ return(-loglik) }
>
> dofloglik(1, 1:4)
[1] 2.28946
> dofloglik(1, 2:5)
[1] 2.28946
> dofloglik(1, 3:6)
[1] 2.28946
QUESTION
I'm writing a Lincoln-Petersen MLE function in R. I have two versions of my distribution function, one that uses the gamma function, and one that uses Rs internal dmultinom (which uses lgamma). Both return identical results when I plug in sample values, however the dmultinom version fails to provide acceptable MLE estimates. I'm curious as to what is causing this.
...ANSWER
Answered 2019-Jun-19 at 21:53dmultinom(c(m_2,n_1-m_2,n_2-m_2,N-r),prob=......)
is the same as dmultinom(c(m_2,n_1-m_2,n_2-m_2,as.integer(N-r)),prob=......)
. So a small variation of N
does not change this value, because as.integer(N-r)
does not change:
QUESTION
I am learning Perl6 from Perl5.
In order to make this compile, I'll post the whole program:
...ANSWER
Answered 2019-Jan-21 at 21:41(It turned out that this answer completely missed what was ailing @con. But I'll not delete it because it gathers together some hopefully useful links regarding rational numerics.)
What's wrong?why is array skipping calculated values inside declaration?
It isn't.
I am learning Perl6 ...
Numbers like 1.3
are decimals in math and in Perl 6. Some explanations:
My Medium comment on Baking rationals into a programming language.
The P6 doc's Numerics page. (Written by Zoffix. Thank you for the ton of excellent stuff you did for P6 Zoffix.)
My SO answer to the question "Does Perl 6 performance suffer by using rationals for decimal numbers".
... from Perl5
Something about this belongs in one of the Perl 5 to Perl 6 guide docs. Would you be willing to open a new doc issue?
[1.0/15.0, 10.0/62.0],#this isn't evaluated
[1.0/10, 2/50.0],#neither is this
They're all evaluated.
In math and in P6 a literal 1.0
is a decimal is a rational. foo / bar
is also a rational.
(Well, it is if foo
and bar
are both integers or rationals and either the denominator of the result remains 64 bits or less or one of foo
or bar
is an arbitrary precision FatRat
rational.)
However, Perl6 doesn't seem to like values like I have indicated here.
You haven't explained the situation in which you're seeing something that makes you think P6 doesn't like them.
A strong possibility is that, per Brad Gilbert++'s comment, you are seeing values like, say, <1/15>
instead of 0.066667
. The former is a P6 literal value that 100% accurately denotes 1/15
. To 100% accurately denote that in decimal the display would have to be 0.06666666666666...
with a ...
or some such at the end to denote an infinitely repeating final 6
. But <1/15>
denotes the same number and is shorter and arguably simpler so dd
and .perl
use the <1/15>
form instead.
How can I get Perl6 to evaluate expressions like this when I'm declaring the 2D array?
You don't have to do anything. It's evaluating them. :)
QUESTION
i run jq v1.6 on Windows 10,
my input is "2009-12-20 08:00:00" and i want to get the Day of Week.
my test filter is ("2009-12-20 08:00:00" | sub(" "; "T") + "Z" | fromdate | gmtime)
but all i get is an error:
jq: error: strptime/1 not implemented on this platform
Tried so many things, but nothing worked.
builtins
returns the relevant functions:
ANSWER
Answered 2019-Jan-08 at 22:53Here are two alternatives for solving the problem on a Windows 10 machine:
Install Linux for WindowsThen, once jq has been installed (e.g. using linuxbrew), you could use this filter:
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