scythe | A 3'-end adapter contaminant trimmer | Machine Learning library
kandi X-RAY | scythe Summary
kandi X-RAY | scythe Summary
Scythe uses a Naive Bayesian approach to classify contaminant substrings in sequence reads. It considers quality information, which can make it robust in picking out 3'-end adapters, which often include poor quality bases. Most next generation sequencing reads have deteriorating quality towards the 3'-end. It's common for a quality-based trimmer to be employed before mapping, assemblies, and analysis to remove these poor quality bases. However, quality-based trimming could remove bases that are helpful in identifying (and removing) 3'-end adapter contaminants. Thus, it is recommended you run Scythe before quality-based trimming, as part of a read quality control pipeline. The Bayesian approach Scythe uses compares two likelihood models: the probability of seeing the matches in a sequence given contamination, and not given contamination. Given that the read is contaminated, the probability of seeing a certain number of matches and mismatches is a function of the quality of the sequence. Given the read is not contaminated (and is thus assumed to be random sequence), the probability of seeing a certain number of matches and mismatches is chance. The posterior is calculated across both these likelihood models, and the class (contaminated or not contaminated) with the maximum posterior probability is the class selected.
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QUESTION
Consider this array:
...ANSWER
Answered 2021-May-01 at 14:24Use the method
QUESTION
So I'm making progress on my music bot. Currently, it shuffles the playlist, and plays every song in the playlist once. The next step is for me to make him re-shuffle the playlist after it has played every song, and go again (I'll make the catch to 'stop' him using a command later). In theory - all I have to do is add in a check that 'if the array contains an entry in the 0 position, play that next song', otherwise 'if the array was empty, shuffle the playlist again, and THEN play the next song'
Unfortunately, even if the next song is undefined - the check is failing, and after the first run-through of the playlist, he starts spamming songs that are undefined. I have tried multiple ways of checking this. Checking if the entry in the array is undefined, checking if the length of the array is undefined, checking whether the entry was or was not contained in the original list of songs - same problem for all of them.
...ANSWER
Answered 2020-Aug-02 at 08:49It's a bit hard without seeing all your code so I've made a simple version which should suit - it just prints rather than playing anything or messaging but this should be a reasonable structure for you.
QUESTION
Building further on my music bot... I'm trying to make the jump from having him play a single song, and then leave, to having him play a finite list of songs, and then leave.
This should not be confused with a queue - the list of songs is predetermined and finite. It can't be added to or changed by the bot, at least at this time. The bot DOES shuffle the list though.
The problem right now is that instead of playing the songs in the list, one by one - he plays the first song, then the second... and stops dead.
I've tried setting up a loop based on the length of the SongToPlay array, but all that does is make the bot rapidly spam through each song (before the previous song had time to play), and leave.
...ANSWER
Answered 2020-Aug-01 at 22:24const connection = message.member.voice.channel.name; const channel = message.member.voice.channel; message.channel.send("Now playing Scythe OST in the "+connection+" channel.");
var SongToPlay = shuffle(testbells); channel.join().then(connection => {
let currentSong = 0;
const keepPlaying = () => {
console.log(`Now playing ${SongToPlay[currentSong]}.`);
message.channel.send(`Now playing ${SongToPlay[currentSong]}.`);
const dispatcher =
connection.play(`./Scythe Digital Edition - Soundtrack/${SongToPlay[currentSong]}.mp3`);
dispatcher.setVolume(0.1);
dispatcher.on("finish", () => {
if (currentSong < SongToPlay.length - 1) {
currentSong++;
keepPlaying();
}
});
}
keepPlaying();
}).catch(console.error);
QUESTION
I am working on a discord bot now named Amadeus. Amadeus plays music when he receives a given command... well... he will. Right now while I'm still working on him he only plays one song. While he connects to the voice channel and plays his song perfectly fine - he does not leave the voice channel once his song is concluded. For some reason, I guess it never detects that the song ends? Any help appreciated
...ANSWER
Answered 2020-Aug-01 at 09:55As @Tenclea suggested, if you take a look at the Discord.js Documentation > Topics you can see that dispatcher.on("finish", () => {}) is used.
QUESTION
I have a linux tool that (greatly simplifying) cuts me the sequences specified in illumnaSeq file. I have 32 files to grind. One file is processed in about 5 hours. I have a server on the centos, it has 128 cores.
I've found a few solutions, but each one works in a way that only uses one core. The last one seems to fire 32 nohups, but it'll still pressurize the whole thing with one core.
My question is, does anyone have any idea how to use the server's potential? Because basically every file can be processed independently, there are no relations between them.
This is the current version of the script and I don't know why it only uses one core. I wrote it with the help of advice here on stack and found on the Internet:
...ANSWER
Answered 2020-Mar-23 at 11:16IMHO, the most likely solution is GNU Parallel, so you can run up to say, 64 jobs in parallel something like this:
QUESTION
Problem
how to correctly remove an image with jquery/javascript using its coordinate?
Pen
Code and explanation
I declared one global array of objects
...ANSWER
Answered 2018-Sep-04 at 19:05Probably it isn't be the best answer, and in this case any kind of correction will be really appreciated (i really need to learn) but i find a solution to this.
QUESTION
This is my 2d list:
...ANSWER
Answered 2017-Nov-01 at 20:43Python's CSV library has that power:
QUESTION
I've tried to play with the % but the photos keep clipping each other instead of sitting side by side.Im just trying to get each photo to sit next to each other horizontally.Any ideas on what im doing wrong? Ps im new to coding so if this is a easy fix my bad
Snippet:
...ANSWER
Answered 2017-Sep-10 at 15:24If you want to see your images horizontally sitting next to each other you shouldn't use very short width like you did (max-width: 750px;) and you don't need to place it in a list. So here is your code:
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