GFF | imitation QQ communication project , based on high IOCP | TCP library

by yswenli C# Version: v6.2.6.2 License: No License

X-Ray Key Features Code Snippets Community Discussions(10)Vulnerabilities Install Support

kandi X-RAY | GFF Summary

GFF is a C# library typically used in Networking, TCP applications. GFF has no bugs, it has no vulnerabilities and it has low support. You can download it from GitHub.

GFF is a imitation QQ communication project, based on SAEA.MessageSocket、SAEA.Http、SAEA.MVC.

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Support

GFF has a low active ecosystem.

It has 165 star(s) with 79 fork(s). There are 16 watchers for this library.

It had no major release in the last 12 months.

There are 2 open issues and 0 have been closed. There are no pull requests.

It has a neutral sentiment in the developer community.

The latest version of GFF is v6.2.6.2

Quality

GFF has 0 bugs and 0 code smells.

Security

GFF has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

GFF code analysis shows 0 unresolved vulnerabilities.

There are 0 security hotspots that need review.

License

GFF does not have a standard license declared.

Check the repository for any license declaration and review the terms closely.

Without a license, all rights are reserved, and you cannot use the library in your applications.

Reuse

GFF releases are available to install and integrate.

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GFF Key Features

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GFF Examples and Code Snippets

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Community Discussions

Trending Discussions on GFF

merging two files based on two columns in r

Adding data to a dataframe based on groups

Sed function in shell applied to all .gff files in a directory

Store values from for loop in R

While read loop appending

How do I build GDAL with OpenCL against a custom CUDA installation?

how to create symlinks for all partial file name matches?

How to use Snakemake container for htslib (bgzip + tabix)

Flutter Firebase listview with filters

Replace pattern from first column in file2 by pattern in second column in file2 within file1

QUESTION

merging two files based on two columns in r

Asked 2021-May-26 at 12:06

I have a gff file:

...

ANSWER

Answered 2021-May-25 at 23:00

I'm not 100% sure what you are trying to do, so I propose a solution for the problem I believe you want to solve.

First we separate the ranges in gff:

Source https://stackoverflow.com/questions/67696273

QUESTION

Adding data to a dataframe based on groups

Asked 2021-Mar-02 at 12:56

I'm working with bioinformatic data, with a gene in each row and statistics/metadata in the columns. Some genes are from the same organism which is indicated by column "ID", and I grouped the data on this variable.

...

ANSWER

Answered 2021-Mar-02 at 12:56

I think the easiest way to do this is by reading first all the .gff files. I'm not familiar with the format so my example will use the .csv extension. The following code reads all the files in the "dir" directory as a list column, then unnests it so is a regular tibble.

After that you can just left_join() using both tibbles and then group by ID.

Source https://stackoverflow.com/questions/66439466

QUESTION

Sed function in shell applied to all .gff files in a directory

Asked 2021-Mar-01 at 20:13

I am working with .gff3 files trying to remove contig sequences in the bottom of many files in a directory. The contig sequences are separated from the rest of the file with a ##FASTA, and I wish to delete everything below (DNA sequences, FASTA format).

This script works for one file:

...

ANSWER

Answered 2021-Mar-01 at 08:04

You are missing a semicolon after N=$(basename $F). The way it is written is it only a one-shot assignment, i.e. N is empty when used in the redirection.

You can avoid using basename entirely if you use the shell's builtin string processing: ${F##*/} removes the longest left part matching */.

Source https://stackoverflow.com/questions/66418384

QUESTION

Store values from for loop in R

Asked 2021-Jan-20 at 15:50

I have a large dataframe with scaffold annotations (example rows):

...

ANSWER

Answered 2021-Jan-20 at 15:50

given your sample code you could use something like:

Source https://stackoverflow.com/questions/65809134

QUESTION

While read loop appending

Asked 2020-Nov-18 at 06:10

I have to extract lines from file1 corresponding to a list of words in file2

I'm wondering what's the difference between doing:

...

ANSWER

Answered 2020-Nov-17 at 19:00

No loop: grep -f file2 file1

You might consider grep -Ff file2 file1 with -F for fixed strings. If your file2 is not regexes, but plain text, using -F can speed things up for large inputs.

Source https://stackoverflow.com/questions/64881567

QUESTION

How do I build GDAL with OpenCL against a custom CUDA installation?

Asked 2020-Nov-04 at 16:08

I am trying to build GDAL against OpenCL to get GPU accelerated raster operations, depending on Cuda. I managed to get ./configure to complete and start compiling with make. However, when compiling gdalinfo, the compilation fails because it can't find the OpenCL symbols.

I'm pretty sure it is because a -lOpenCL flag is missing somewhere, but (1) I don't know where; and (2) I don't know what to change. So my question is how to correctly configure the build commands to use OpenCL?

The build failure error:

...

ANSWER

Answered 2020-Nov-03 at 20:18

You don't need to modify any GDAL makefiles to use the OpenCL - the GDAL build script is pretty good in finding everything you need for that. The only option for the configure script you need is --with-opencl=yes - this yes is essential. The options --with-opencl-include=ARG and --with-opencl-lib=ARG are useful only when your OpenCL installation is not standard - I didn't use them at all and got everything linked correctly.

The CUDA has its own version of OpenCL headers and the loader library, so you can use them even when there are no standard OpenCL (provided by a Linux software updater, for example - the apt) on your box. In case of the CUDA was installed in some non-standard location (for example - in your home directory) you have to tell the GDAL configure script about that:

Source https://stackoverflow.com/questions/64558912

QUESTION

how to create symlinks for all partial file name matches?

Asked 2020-Oct-08 at 22:42

I'm trying to create symlinks to all files in a list of file names, where the file names in the list only partially match the names of the files.

I have a list of partial file names (file_name_list.txt)

...

ANSWER

Answered 2020-Oct-08 at 22:42

files_dir="1"
links_dir="2"
f="filenames_list.txt"

find "$files_dir" -type f -printf "%f\0" | grep -zf "$f" |
    xargs -r0 -I{} ln -rs "$files_dir/{}" "$links_dir/{}"

Source https://stackoverflow.com/questions/64268500

QUESTION

How to use Snakemake container for htslib (bgzip + tabix)

Asked 2020-Sep-24 at 21:01

I have a pipeline which uses a global singularity image and rule-based conda wrappers.

However, some of the tools don't have wrappers (i.e. htslib's bgzip and tabix).

Now I need to learn how to run jobs in containers.

In the official documentation link it says:

"Allowed image urls entail everything supported by singularity (e.g., shub:// and docker://)."

Now I've tried the following image from singularity hub but I get an error:

minimal reproducible example: config.yaml ...

ANSWER

Answered 2020-Sep-24 at 17:38

Using another container solves the issue; however, the fact I'm getting errors from biocontainers is troubling given that these are both very common and used as examples in the literature so I will award the top-answer to whomever can solve that specific issue.

As it were, the use of stackleader/bgzip-utility solve the issue of actually running this rule in a container.

Source https://stackoverflow.com/questions/64050974

QUESTION

Flutter Firebase listview with filters

Asked 2020-Sep-17 at 11:50

I have created a listview in flutter which is pulling the data from firestore. Till here it works fine, but now I want to add some filters using dropdown which will filter the listview based on dropdown values selected by the user. So right now when app loads for the first time the listview comes properly, but when I change the values in dropdown the list doesn't change. I want to update the listview when user selects the dropdown value.

This is the appbar where I have two filters(dropdown values). And as and when user wants to change the filter values(from the dropdown) the list should be updated.

...

ANSWER

Answered 2020-Sep-17 at 11:50

Flutter caches widgets to avoid unnecessary rebuilds. When it goes to build ListPage() the second time it sees the parameters have not changed, because there are no parameters, and reuses the cached version from the first build. Convert the global variables into parameters and you should be fine.

Source https://stackoverflow.com/questions/63394258

QUESTION

Replace pattern from first column in file2 by pattern in second column in file2 within file1

Asked 2020-Jun-27 at 01:01

I have tried to work on a solution for the following: I have a .gff3 file for which I want to replace gene headers into a simplified name. Both the original gene headers and the new gene name are given in a separate file, with the original name in column 1 and the new name in column 2. How can I use sed (I think sed is most suitable here) to replace all occurences in the .gff3 file with the new shortened name in the second column?

Example lines .gff3 file:

...

ANSWER

Answered 2020-Jun-22 at 14:34

This does a full string match from after = to the end of -gene= on each line of .gff3 and should be orders of magnitude faster and more robust than what we had been doing previously since it only replaces the 1-3 strings actually found in each line of the original.gff3 file rather than trying to replace all 18,000+ strings that exist in the rename.txt file:

Source https://stackoverflow.com/questions/62428959

Community Discussions, Code Snippets contain sources that include Stack Exchange Network

Vulnerabilities

No vulnerabilities reported

Install GFF

You can download it from GitHub.

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