repast.simphony | Git repository for Repast Simphony development | Version Control System library

I have a model with some calculations associated with a number of hubs, each with a unique hub code. Hence I configure the batch run as a list of hub codes. However, there could be some errors happens for certain hubs. In such case, the batch run will be auto stopped at the time error happens.

I am wondering if I could configure to tell the batch run to auto jump the hubs that are reporting errors and continue to calculate the remaining hubs to finish the entire batch run list of hubs.

Update on issue clarification:

I have a batch run configuration consists of two key parameters. The hub name and the date. "Hub name" is a list of all hub codes. I have 300 hubs to simulate. The "date" indicates the demand data of a particular date for a hub. I have set the date range from 1 to 5. Thereafter, I have 300 x 5 combination of scenarios to simulate, which forms the batch run configuration.

The batch run, however is likely to be interrupted as some part of the input data is missing for simulating certain hub scenarios (e.g. some hub does not have full 5 days demand data, when the model pulls the input data of a particular date which is missing, the model reports runtime error causing the whole batch run ended). Hence, in reality there is not full 300 X 5 viable scenarios, some are missing or invalid.

I want the batch run to jump simulating the scenarios if there are some errors and continue to simulate the rest of the valid scenarios. e.g. if I have hub-1, hub-2, hub-3, hub-4, hub-5 as the batch scenarios. if these 5 scenarios are happen to be allocated to the same cpu core, I hope it will finish whatever it can finish. i.e. if hub-3 reportes an error, batch run will jump it and continue to simulate hub-4 and hub-5 scenarios. so finally I can still get hub-1,2,4,5 results except hub-3 being error reportred and hence empty result.

Update: the traceback info: (it seems try catch exception (RunEnvironment.getInstance().endRun();) won't work in initialization (context builder)

INFO [AWT-EventQueue-0] 14:11:03,592 repast.simphony.batch.gui.BatchConfigMediator - Writing batch run config file to: C:\Users\xxx\Desktop\Repast\Hub_Unload\output\config.props INFO [AWT-EventQueue-0] 14:11:03,692 repast.simphony.batch.gui.BatchConfigMediator - Unrolling batch parameter file: C:\Users\xxx\Desktop\Repast\Hub_Unload\batch\batch_params.xml to C:\Users\xxx\AppData\Local\Temp\unrolledParamFile.txt INFO [SwingWorker-pool-2-thread-1] 14:11:13,463 repast.simphony.batch.ssh.LocalSession - Copying locally C:\Users\xxx\AppData\Local\Temp\Jie_localhost7191822269942717344.zip to C:\Users\xxx\AppData\Local\Temp\simphony_model_1595484669853 ... INFO [SwingWorker-pool-2-thread-1] 14:11:13,492 repast.simphony.batch.ssh.LocalSession - Copying Finished. INFO [SwingWorker-pool-2-thread-1] 14:11:13,494 repast.simphony.batch.ssh.SessionsDriver - Initialization Time: 0.0606 INFO [SwingWorker-pool-2-thread-1] 14:11:13,494 repast.simphony.batch.ssh.LocalSession - Unzipping model C:\Users\xxx\AppData\Local\Temp\simphony_model_1595484669853\Jie_localhost7191822269942717344.zip INFO [SwingWorker-pool-2-thread-1] 14:11:13,955 repast.simphony.batch.ssh.LocalSession - Running model on localhost ... INFO [Thread-0] 14:11:21,769 repast.simphony.batch.ssh.LocalSession - WARNING: An illegal reflective access operation has occurred INFO [Thread-0] 14:11:21,769 repast.simphony.batch.ssh.LocalSession - WARNING: Illegal reflective access by com.thoughtworks.xstream.core.util.Fields (file:/C:/Users/xxx/AppData/Local/Temp/simphony_model_1595484669853/lib/xstream-1.4.7.jar) to field java.util.TreeMap.comparator INFO [Thread-0] 14:11:21,769 repast.simphony.batch.ssh.LocalSession - WARNING: Please consider reporting this to the maintainers of com.thoughtworks.xstream.core.util.Fields INFO [Thread-0] 14:11:21,770 repast.simphony.batch.ssh.LocalSession - WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations INFO [Thread-0] 14:11:21,770 repast.simphony.batch.ssh.LocalSession - WARNING: All illegal access operations will be denied in a future release INFO [Thread-0] 14:11:21,806 repast.simphony.batch.ssh.LocalSession - INFO [Thread-0] 14:11:21,807 repast.simphony.batch.ssh.LocalSession - Hub Code: 769WX INFO [Thread-0] 14:11:21,807 repast.simphony.batch.ssh.LocalSession - Date: 2 INFO [Thread-0] 14:11:21,807 repast.simphony.batch.ssh.LocalSession - INFO [Thread-0] 14:11:21,807 repast.simphony.batch.ssh.LocalSession - Header a.require_id,a.line_code,a.send_zone_code,a.arrive_zone_code,a.line_level,a.arr_date,a.arr_time,sim_date,sim_date_adj,arr_time_adj,shift,shift_start,shift_last_arr,shift_end,a.car_type,sum_qty,sum_t77,sum_und3_qty,sum_und3bag_qty,sum_lt_qty,sum_hv_qty INFO [Thread-0] 14:11:21,810 repast.simphony.batch.ssh.LocalSession - Header ��ת������,ж���ڱ���,���߱��,ж������,ж��������ж����,���ػ�ж���ٶȣ���/Сʱ��,�ػ�ж���ٶȣ���/Сʱ��,�����������(��/Сʱ) INFO [Thread-0] 14:11:21,817 repast.simphony.batch.ssh.LocalSession - Dock INFO [Thread-0] 14:11:21,866 repast.simphony.batch.ssh.LocalSession - WARN [main] 14:11:21,864 repast.simphony.query.AbstractPropertyQuery - Possible error while creating property query INFO [Thread-0] 14:11:21,866 repast.simphony.batch.ssh.LocalSession - java.lang.IllegalArgumentException: Property 'arr_tm' not found. INFO [Thread-0] 14:11:21,867 repast.simphony.batch.ssh.LocalSession - at repast.simphony.query.AbstractPropertyQuery.propertyNotFound(AbstractPropertyQuery.java:88) INFO [Thread-0] 14:11:21,867 repast.simphony.batch.ssh.LocalSession - at repast.simphony.query.PropertyLessThanEquals.createPredicate(PropertyLessThanEquals.java:94) INFO [Thread-0] 14:11:21,867 repast.simphony.batch.ssh.LocalSession - at repast.simphony.query.AbstractPropertyQuery.query(AbstractPropertyQuery.java:83) INFO [Thread-0] 14:11:21,867 repast.simphony.batch.ssh.LocalSession - at hub_Unload.Initialization_Builder.build(Initialization_Builder.java:274) INFO [Thread-0] 14:11:21,867 repast.simphony.batch.ssh.LocalSession - at repast.simphony.dataLoader.engine.ClassNameContextBuilder.build(ClassNameContextBuilder.java:41) INFO [Thread-0] 14:11:21,867 repast.simphony.batch.ssh.LocalSession - at repast.simphony.dataLoader.engine.DataLoaderControllerAction.runInitialize(DataLoaderControllerAction.java:48) INFO [Thread-0] 14:11:21,867 repast.simphony.batch.ssh.LocalSession - at repast.simphony.engine.controller.DefaultController$2.visit(DefaultController.java:214) INFO [Thread-0] 14:11:21,867 repast.simphony.batch.ssh.LocalSession - at repast.simphony.engine.controller.DefaultController$2.visit(DefaultController.java:1) INFO [Thread-0] 14:11:21,867 repast.simphony.batch.ssh.LocalSession - at repast.simphony.util.collections.NaryTree.preOrderTraverals(NaryTree.java:292) INFO [Thread-0] 14:11:21,867 repast.simphony.batch.ssh.LocalSession - at repast.simphony.util.collections.NaryTree.preOrderTraverals(NaryTree.java:295) INFO [Thread-0] 14:11:21,867 repast.simphony.batch.ssh.LocalSession - at repast.simphony.util.collections.NaryTree.preOrderTraverals(NaryTree.java:295) INFO [Thread-0] 14:11:21,868 repast.simphony.batch.ssh.LocalSession - at repast.simphony.util.collections.NaryTree.preOrderTraversal(NaryTree.java:288) INFO [Thread-0] 14:11:21,868 repast.simphony.batch.ssh.LocalSession - at repast.simphony.engine.controller.DefaultController.runInitialize(DefaultController.java:212) INFO [Thread-0] 14:11:21,868 repast.simphony.batch.ssh.LocalSession - at repast.simphony.engine.controller.DefaultController.runInitialize(DefaultController.java:383) INFO [Thread-0] 14:11:21,868 repast.simphony.batch.ssh.LocalSession - at repast.simphony.batch.OneRunBatchRunner.run(OneRunBatchRunner.java:101) INFO [Thread-0] 14:11:21,868 repast.simphony.batch.ssh.LocalSession - at repast.simphony.batch.InstanceRunner.run(InstanceRunner.java:195) INFO [Thread-0] 14:11:21,868 repast.simphony.batch.ssh.LocalSession - at repast.simphony.batch.InstanceRunner.main(InstanceRunner.java:217) INFO [Thread-0] 14:11:21,871 repast.simphony.batch.ssh.LocalSession - ERROR [main] 14:11:21,869 repast.simphony.batch.InstanceRunner - Error while running model INFO [Thread-0] 14:11:21,871 repast.simphony.batch.ssh.LocalSession - java.lang.IndexOutOfBoundsException: Index -1 out of bounds for length 0 INFO [Thread-0] 14:11:21,871 repast.simphony.batch.ssh.LocalSession - at java.base/jdk.internal.util.Preconditions.outOfBounds(Preconditions.java:64) INFO [Thread-0] 14:11:21,871 repast.simphony.batch.ssh.LocalSession - at java.base/jdk.internal.util.Preconditions.outOfBoundsCheckIndex(Preconditions.java:70) INFO [Thread-0] 14:11:21,871 repast.simphony.batch.ssh.LocalSession - at java.base/jdk.internal.util.Preconditions.checkIndex(Preconditions.java:248) INFO [Thread-0] 14:11:21,871 repast.simphony.batch.ssh.LocalSession - at java.base/java.util.Objects.checkIndex(Objects.java:372) INFO [Thread-0] 14:11:21,871 repast.simphony.batch.ssh.LocalSession - at java.base/java.util.ArrayList.get(ArrayList.java:458) INFO [Thread-0] 14:11:21,871 repast.simphony.batch.ssh.LocalSession - at hub_Unload.Initialization_Builder.build(Initialization_Builder.java:308) INFO [Thread-0] 14:11:21,871 repast.simphony.batch.ssh.LocalSession - at repast.simphony.dataLoader.engine.ClassNameContextBuilder.build(ClassNameContextBuilder.java:41) INFO [Thread-0] 14:11:21,872 repast.simphony.batch.ssh.LocalSession - at repast.simphony.dataLoader.engine.DataLoaderControllerAction.runInitialize(DataLoaderControllerAction.java:48) INFO [Thread-0] 14:11:21,872 repast.simphony.batch.ssh.LocalSession - at repast.simphony.engine.controller.DefaultController$2.visit(DefaultController.java:214) INFO [Thread-0] 14:11:21,872 repast.simphony.batch.ssh.LocalSession - at repast.simphony.engine.controller.DefaultController$2.visit(DefaultController.java:1) INFO [Thread-0] 14:11:21,872 repast.simphony.batch.ssh.LocalSession - at repast.simphony.util.collections.NaryTree.preOrderTraverals(NaryTree.java:292) INFO [Thread-0] 14:11:21,872 repast.simphony.batch.ssh.LocalSession - at repast.simphony.util.collections.NaryTree.preOrderTraverals(NaryTree.java:295) INFO [Thread-0] 14:11:21,872 repast.simphony.batch.ssh.LocalSession - at repast.simphony.util.collections.NaryTree.preOrderTraverals(NaryTree.java:295) INFO [Thread-0] 14:11:21,872 repast.simphony.batch.ssh.LocalSession - at repast.simphony.util.collections.NaryTree.preOrderTraversal(NaryTree.java:288) INFO [Thread-0] 14:11:21,872 repast.simphony.batch.ssh.LocalSession - at repast.simphony.engine.controller.DefaultController.runInitialize(DefaultController.java:212) INFO [Thread-0] 14:11:21,872 repast.simphony.batch.ssh.LocalSession - at repast.simphony.engine.controller.DefaultController.runInitialize(DefaultController.java:383) INFO [Thread-0] 14:11:21,872 repast.simphony.batch.ssh.LocalSession - at repast.simphony.batch.OneRunBatchRunner.run(OneRunBatchRunner.java:101) INFO [Thread-0] 14:11:21,872 repast.simphony.batch.ssh.LocalSession - at repast.simphony.batch.InstanceRunner.run(InstanceRunner.java:195) INFO [Thread-0] 14:11:21,872 repast.simphony.batch.ssh.LocalSession - at repast.simphony.batch.InstanceRunner.main(InstanceRunner.java:217)

I'm attempting to conduct a batch run of a model through the Simphony GUI. I have text sink with relative path "./Test_Data_FileSink" created in my scenario tree. This file is created and saved with single runs through the GUI. However, when I conduct a batch run, no file is created within the localhost instance. When I navigate to the instance, I see a debug.log, FAILURE_null, instance.log, and param_input.txt, but no Test_Data_FileSink file. The batch process attempts to compile the data across instances and returns an empty batch_param_map.txt and Test_Data_FileSink.txt within the designated output location.

Warning message is displayed through Batch Run Configuration Window below:

'WARN [SwingWorker-pool-2-thread-1] 12:15:28,906 repast.simphony.batch.ssh.OutputFinder - No model output found matching glob:{**\,}Test_Data_FileSink_ModelOutput*.txt in C:\Users\user\AppData\Local\Temp\simphony_model_1582046063159\instance_1'

There is an additional error in the batch run console log where the model might be looking for the UI.

repast.simphony.batch.InstanceRunner - Error while running model java.lang.NoClassDefFoundError: repast/simphony/ui/RSApplication

The GUI UI does allow for parameter input, but I can't see where the model depends on it to run if the parameters are already set. I've attempted to insert some conditional statements around setting the UI

I am following the instruction to test calling my simulation model from another java program.

I am experiencing an error that prevents repast simphony from running when prompted from Eclipse. Instead of running a model when prompted, the window disappears and an error message appears within Eclipse.

The steps I've followed to this point on my Mac (for repast simphony setup) are:

1) Download a Java 8 JDK from Adopt Open JDK (since I need Java 8 to use repast 3D later). Copy the package to /Library/Java/JavaVirtualMachines.

2) Download Eclipse IDE for Eclipse Committers 2019-06 and put in Applications folder.

3) Install Groovy Eclipse 3.4.0 from the update site (https://dist.springsource.org/release/GRECLIPSE/3.4.0/e4.12), and install the Eclipse Groovy development tools and the Groovy compiler 2.4 from this link in Eclipse.

4) Install repast simphony 2.7.0 from https://repocafe.cels.anl.gov/repos/repast in Eclipse.

5) Set Groovy compiler to 2.4.17 in Eclipse.

6) Import repast examples

7) Select a demonstration model (e.g., GeoZombies) and try to run.

Once I complete step 7 above, I get several console warning messages:

WARNING: An illegal reflective access operation has occurred WARNING: Illegal reflective access by com.thoughtworks.xstream.core.util.Fields (file:/Applications/Eclipse.app/Contents/Eclipse/plugins/repast.simphony.runtime_2.7.0/lib/xstream-1.4.7.jar) to field java.util.TreeMap.comparator WARNING: Please consider reporting this to the maintainers of com.thoughtworks.xstream.core.util.Fields WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations WARNING: All illegal access operations will be denied in a future release

The Java window for repast simphony opens even though this error has appeared in the Eclipse console. However, when I click the button to "Start Run" in the Java window for GeoZombies, the Java window shuts with no warning, and the Eclipse console produces the following error:

2019-12-03 11:03:46.637 java[63571:533520] * Terminating app due to uncaught exception 'NSInternalInconsistencyException', reason: 'NSWindow drag regions should only be invalidated on the Main Thread!' * First throw call stack: ( 0 CoreFoundation 0x00007fff3bab6acd __exceptionPreprocess + 256 1 libobjc.A.dylib 0x00007fff66193a17 objc_exception_throw + 48 2 CoreFoundation 0x00007fff3bad0629 -[NSException raise] + 9 3 AppKit 0x00007fff390765ca -[NSWindow(NSWindow_Theme) _postWindowNeedsToResetDragMarginsUnlessPostingDisabled] + 317 4 AppKit 0x00007fff390739f7 -[NSWindow _initContent:styleMask:backing:defer:contentView:] + 1479 5 AppKit 0x00007fff3907342a -[NSWindow initWithContentRect:styleMask:backing:defer:] + 45 6 libnativewindow_macosx.jnilib 0x0000000136bfdf9e Java_jogamp_nativewindow_macosx_OSXUtil_CreateNSWindow0 + 398 7 ??? 0x000000011e0f5c90 0x0 + 4799290512 ) libc++abi.dylib: terminating with uncaught exception of type NSException

I would appreciate any assistance someone can provide about how to resolve this error and get repast simphony working. Thank you.

I dont know why I get NullPointerException:

Issue 1:

Below is the error I received but I have no idea where is wrong.

I have two types edges in my supply chain model: demand_links and supply_links. the default color is gray for all links. But I want to change the color of demand_links to red each time the attribute of the demand_link is changed (Note:the edge is the custom edge agent through edge creator). How to do this?

Below is my codes for simple test and it didn't work.

I am previously working with Netlogo for years and I am very much getting used to developing the agent-based model based on a set of procedures. An example of supply chain simulation model structure looks like below:

I have a model with a lot of edges (links) between different sorts of other agents (objects). I would like to model these edges as agents where I could add attributes and schedule actions. It is helpful to see a simple example of how to do this job?

update: I followed your instructions and get an error when running the model: