Stitching | Stitching plugins reconstruct big images from tiled input | Computer Vision library

 by   fiji Java Version: Current License: GPL-2.0

kandi X-RAY | Stitching Summary

kandi X-RAY | Stitching Summary

Stitching is a Java library typically used in Artificial Intelligence, Computer Vision applications. Stitching has no bugs, it has no vulnerabilities, it has build file available, it has a Strong Copyleft License and it has low support. You can download it from GitHub.

There is an increasing demand to image large biological specimen at high resolution. Typically those specimen do not fit in the field of view of the microscope. To overcome this drawback, motorized stages moving the sample are used to create a tiled scan of the whole specimen. The physical coordinates provided by the microscope stage are not precise enough to allow reconstruction ("Stitching") of the whole image from individual image stacks. The Stitching Plugin (2d-5d) is able to reconstruct big images/stacks from an arbitrary number of tiled input images/stacks, making use of the Fourier Shift Theorem that computes all possible translations (x, y[, z]) between two 2d/3d images at once, yielding the best overlap in terms of the cross correlation measure. If more than two input images/stacks are used the correct placement of all tiles is determined using a global optimization. The stitching is able to align an arbitrary amount of channels and supports timelapse registration. To remove brightness differences at the tile borders, non-linear intensity blending can be applied. For further details, please see the: - documentation - publication:
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            kandi-support Support

              Stitching has a low active ecosystem.
              It has 60 star(s) with 55 fork(s). There are 22 watchers for this library.
              OutlinedDot
              It had no major release in the last 6 months.
              There are 29 open issues and 16 have been closed. On average issues are closed in 266 days. There are 2 open pull requests and 0 closed requests.
              It has a neutral sentiment in the developer community.
              The latest version of Stitching is current.

            kandi-Quality Quality

              Stitching has 0 bugs and 0 code smells.

            kandi-Security Security

              Stitching has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.
              Stitching code analysis shows 0 unresolved vulnerabilities.
              There are 0 security hotspots that need review.

            kandi-License License

              Stitching is licensed under the GPL-2.0 License. This license is Strong Copyleft.
              Strong Copyleft licenses enforce sharing, and you can use them when creating open source projects.

            kandi-Reuse Reuse

              Stitching releases are not available. You will need to build from source code and install.
              Build file is available. You can build the component from source.

            Top functions reviewed by kandi - BETA

            kandi has reviewed Stitching and discovered the below as its top functions. This is intended to give you an instant insight into Stitching implemented functionality, and help decide if they suit your requirements.
            • Starts the UI
            • Defines the grid layout
            • Create the layout from a multi - series file
            • Optimize the compare pair
            • Entry point for switching between two images
            • Performs a pairwise stitch algorithm
            • Compute compare pairs
            • Entry point
            • Helper method to add enable or disable enabler on a given widget
            • Update the error costs of all the tiles
            • Helper method to add an inverse enabler listener
            • Applies this region to the model
            • Main entry point
            • Display an image switch
            • Fits a 2D translation model into the model
            • Called when the mouse is released
            • Checks if two tiles intersect
            • fuse the input images
            • Reverse the input image into XYZT
            • Fits a set of points into 3D model
            • The main method
            • Launch a wizard
            • The main method to interact with the data
            • Launch the grid
            • Entry point to the campaign
            • Create a new image for a new image
            Get all kandi verified functions for this library.

            Stitching Key Features

            No Key Features are available at this moment for Stitching.

            Stitching Examples and Code Snippets

            No Code Snippets are available at this moment for Stitching.

            Community Discussions

            QUESTION

            Make can't find my opencv.hpp file - how to direct it?
            Asked 2022-Apr-15 at 16:36

            I have a dual camera hardware module for my raspberry pi zero. It requires some software to get working though. I have cloned the required repo from, as seen here:

            ...

            ANSWER

            Answered 2022-Apr-15 at 16:36

            This has nothing to do with make per se. The problem is that your compiler invocation is wrong for the include statement you have.

            You can debug this yourself: first, see the command make invoked:

            Source https://stackoverflow.com/questions/71886375

            QUESTION

            HTML 5 wait for drawImage to finish in a Vue SPA
            Asked 2022-Mar-29 at 19:44

            I have been trying to debug something for a week and I now suspect the problem is that the drawImage function does not have time to finish. I have a for loop that composes a canvas element by stitching together two different canvas elements and then add that composedCanvas as a frame to a GIF.js object. The problem I keep running into is that the bottom stitched canvas does not appear or partially appears (the picture below started to draw but did not finish) in my output GIF file. My question is how do I ensure synchronous execution of drawImage in the context of a Vue SPA method. I have experimented with Promise, but I have not gotten it to work. Can anyone explain and help me with this, please?

            EDIT : I have tried wrapping my drawImage in a promise and await but it raised type errors.

            ...

            ANSWER

            Answered 2022-Mar-29 at 19:44

            I managed to get it working by properly wrapping the drawImage step in a separate method and inside a promise the proper way. See the code below for an example of two methods that were the culprits but are now fixed.

            Source https://stackoverflow.com/questions/71665909

            QUESTION

            How to embed date as variable into Google Ads Query Language?
            Asked 2022-Mar-10 at 16:48

            I am using python to execute the query and retrieve the data from Google Ads I am trying to set start and end date as variable and use these in my query.

            The query looks like this:

            ...

            ANSWER

            Answered 2022-Mar-10 at 16:48

            To me it looks as if you're missing the single quotes that are required for a date literal in GAQL. In order to parametrize the query, you could use a formatted string literal (assuming you are using Python 3.6 or newer) and do something like

            Source https://stackoverflow.com/questions/71301147

            QUESTION

            R geom_tile on theme_void has blank space above and below plot
            Asked 2022-Feb-27 at 17:18

            When using geom_tile() to make a ggplot object with theme_void() there are blank areas at top and bottom of plot, and when using patchwork to add pieces these cause a mis-alignment of right=side marginal bars (as in screenshot attached).

            Please is there a way to eliminate the blank spaces? I tried a custom theme (code further below) but it didnt help (and sometimes put space on left/right sides also)

            ...

            ANSWER

            Answered 2022-Feb-27 at 17:18

            You could try to specify axis limits and suppress automatic axis expansion. Setting axis limits is more straightforward for factors: if needed, convert numeric tile coordinates to character (as.character) or factor (as.factor). Also remove the legend.

            Example of stripped heatmap:

            Source https://stackoverflow.com/questions/71286555

            QUESTION

            Remove gap between areas of image
            Asked 2021-Dec-23 at 02:31

            I have merged two lung images using an online merging tool to display a full image.

            The problem is that since the background of each image is black I got an unwanted gap between the lungs in the image displayed.

            I would like to know if there is a way to remove an area from an image either with code with an algorithm or with an online tool and reduce the gap between the lungs.

            Another approach I checked was using OpenCV with Python for a panoramic image stitching, which I will try as a last resort to connect my images.

            My desired result:

            ...

            ANSWER

            Answered 2021-Dec-23 at 01:51

            Here is one way as mention in my comments for Python/OpenCV.

            • Read input and convert to grayscale
            • Threshold to binary
            • Get external contours
            • Filter contours to keep only large ones and put bounding box values into list. Also compute the max width and max height from bounding boxes.
            • Set desired amount of padding
            • Create a black image the size of max width and max height
            • Sort the bounding box list by x value
            • Get the first item from the list and crop and pad it
            • Create a black image the size of max height and desired pad
            • Horizontally concatenate with previous padded crop
            • Get the second item from the list and crop and pad it
            • Horizontally concatenate with previous padded result
            • Pad all around as desired
            • Save the output

            Input:

            Source https://stackoverflow.com/questions/70435271

            QUESTION

            Stitch 360 fisheye video with FFmpeg
            Asked 2021-Dec-16 at 08:34

            I have dual-fisheye MP4 files generated from a Rylo camera. Using FFmpeg on Windows, I want to convert the video into equirectangular format.

            The command I have been trying is:

            ...

            ANSWER

            Answered 2021-Dec-16 at 08:34

            The option you're looking for is roll?

            Source https://stackoverflow.com/questions/70284427

            QUESTION

            onClickListener calls TextWatcher: Illegal forward reference
            Asked 2021-Dec-06 at 13:17

            I'm working on Radio Buttons and I want each RadioButton to re-call the TextWatcher in every onClick to update my TextView but it doesn't work.

            all of this code is inside a Fragment and I got only one Activity

            RadioButton:

            ...

            ANSWER

            Answered 2021-Dec-06 at 10:37

            I think the problem is that you can't reference the object that was clicked inside, instead use the view that is passed

            Source https://stackoverflow.com/questions/70243151

            QUESTION

            Akka flow Input (`In`) as Output (`Out`)
            Asked 2021-Nov-24 at 03:36

            I am trying to write a piece of code which does following:-

            1. Reads a large csv file from remote source like s3.
            2. Process the file record by record.
            3. Send notification to user
            4. Write the output to a remote location

            Sample record in input csv:

            ...

            ANSWER

            Answered 2021-Nov-24 at 03:36

            The output of notify is a PushResult, but the input of writeOutput is ByteString. Once you change that it will compile. In case you need ByteString, get the same from OutputRecord.

            BTW, in the sample code that you have provided, a similar error exists in readCSV and process.

            Source https://stackoverflow.com/questions/70088690

            QUESTION

            count row duplicate values in a column sql
            Asked 2021-Nov-23 at 06:25

            I need a query to obtain following result. The aim is to count the repeated value of a column in articlecode. Also the repeated rows should be truncated or displayed.

            Table_1: (Before using query)

            ...

            ANSWER

            Answered 2021-Nov-23 at 06:25

            Using DENSE_RANK we can try:

            Source https://stackoverflow.com/questions/70075315

            QUESTION

            Why is my tiled image shifted with pasting into Pillow?
            Asked 2021-Oct-23 at 21:26

            I am writing a program where I chop up an image into many sub-tiles, process the tiles, then stitch them together. I am stuck at the stitching part. When I run my code, after the first row the tiles each shift one space over. I am working with 1000x1000 tiles and the image size can be variable. I also get this ugly horizontal padding that I can't figure out how to get rid of. Here is a google drive link to the images: https://drive.google.com/drive/folders/1HqRl29YlWUrsYoZP88TAztJe9uwgP5PS?usp=sharing

            Clarification based on the comments

            I take the original black and white image and crop it into 1000px x 1000px black and white tiles. These tiles are then re-colored to replace the white with a color corresponding to a density heatmap. The recolored tiles are then saved into that folder. The picture I included is one of the colored in tiles that I am trying to piece back together. When pieced together it should be the same shape but multi colored version of the black and white image

            ...

            ANSWER

            Answered 2021-Oct-23 at 21:26

            First off, the code below will create the correct image:

            Source https://stackoverflow.com/questions/69339046

            Community Discussions, Code Snippets contain sources that include Stack Exchange Network

            Vulnerabilities

            No vulnerabilities reported

            Install Stitching

            You can download it from GitHub.
            You can use Stitching like any standard Java library. Please include the the jar files in your classpath. You can also use any IDE and you can run and debug the Stitching component as you would do with any other Java program. Best practice is to use a build tool that supports dependency management such as Maven or Gradle. For Maven installation, please refer maven.apache.org. For Gradle installation, please refer gradle.org .

            Support

            For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .
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            CLONE
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            https://github.com/fiji/Stitching.git

          • CLI

            gh repo clone fiji/Stitching

          • sshUrl

            git@github.com:fiji/Stitching.git

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