mlops | Use GitHub to facilitate automation | MLOps library
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QUESTION
I am trying to get the second last value in each row of a data frame, meaning the first job a person has had. (Job1_latest is the most recent job and people had a different number of jobs in the past and I want to get the first one). I managed to get the last value per row with the code below:
first_job <- function(x) tail(x[!is.na(x)], 1)
first_job <- apply(data, 1, first_job)
...ANSWER
Answered 2021-May-11 at 13:56You can get the value which is next to last non-NA value.
QUESTION
Using a self-deployed ClearML server with the clearml-data CLI, I would like to manage (or view) my datasets in the WebUI as shown on the ClearML webpage (https://clear.ml/mlops/clearml-feature-store/):
However, this feature does not show up in my Web UI. According to the pricing page, the feature store is not a premium feature. Do I need to configure my server in a special way to use this feature?
...ANSWER
Answered 2021-Mar-15 at 17:59Disclaimer: I'm part of the ClearML (formerly Trains) Team
I think this screenshot is taken from the premium version... The feature itself exists in the open-source version, but I "think" some of the dataset visualization capabilities are not available in the open-source self hosted version.
Nonetheless, you have a fully featured feature-store, with the ability to add your own metrics / samples for every dataset/feature version. The open-source version also includes the advanced versioning & delta based storage for datasets/features (i.e. only the change set from the parent version is stored)
QUESTION
I am trying to find when it makes sense to create your own Kubeflow MLOps platform:
- If you are Tensorflow only shop, do you still need Kubeflow? Why not TFX only? Orchestration can be done with Airflow.
- Why use Kubeflow if all you are using scikit-learn as it does not support GPU, distributed training anyways? Orchestration can be done with Airflow.
- If you are convinced to use Kubeflow, cloud providers (Azure and GCP) are delivering ML pipeline concept (Google is using Kubeflow under the hood) as managed services. When it makes sense to deploy your own Kubeflow environment then? Even if you have a requirement to deploy on-prem, you have the option to use the cloud resources (nodes and data on cloud) to train your models, and only deploy the model to on-prem. Thus, using Azure or GCP AI Platform as managed service makes the most sense to deliver ML pipelines?
ANSWER
Answered 2020-Apr-25 at 17:37Building an MLOps platform is an action companies take in order to accelerate and manage the workflow of their data scientists in production. This workflow is reflected in ML pipelines, and includes the 3 main tasks of feature engineering
, training
and serving
.
Feature engineering and model training are tasks which require a pipeline orchestrator, as they have dependencies of subsequent tasks and that makes the whole pipeline prone to errors.
Software building pipelines are different from data pipelines, which are in turn different from ML pipelines.
A software CI/CD flow compiles the code to deploy-able artifacts and accelerates the software delivery process. So, code in, artifact out. It's being achieved by the invocation of compilation tasks, execution of tests and deployment of the artifact. Dominant orchestrators for such pipelines are Jenkins, Gitlab-CI, etc.
A data processing flow gets raw data and performs transformation to create features, aggregations, counts, etc. So data in, data out. This is achieved by the invokation of remote distributed tasks, which perform data transformations by storing intermediate artifacts in data repositories. Tools for such pipelines are Airflow, Luigi and some hadoop ecosystem solutions.
In the machine learning flow, the ML engineer writes code to train models, uses the data to evaluate them and then observes how they perform in production in order to improve them. So code and data in, model out. Hence the implementation of such a workflow requires a combination of the orchestration technologies we've discussed above.
TFX present this pipeline and proposes the use of components that perform these subsequent tasks. It defines a modern, complete ML pipeline, from building the features, to running the training, evaluating the results, deploying and serving the model in production
Kubernetes is the most advanced system for orchestrating containers, the defacto tool to run workloads in production, the cloud-agnostic solution to save you from a cloud vendor lock-in and hence optimize your costs.
Kubeflow is positioned as the way to do ML in Kubernetes, by implementing TFX. Eventually it handling the code and data in, model out. It provides a coding environment by implementing jupyter notebooks in the form of kubernetes resources, called notebooks
. All cloud providers are onboard with the project and implement their data loading mechanisms across KF's components. The orchestration is implemented via KF pipelines and the serving of the model via KF serving. The metadata across its components are specified in the specs of the kubernetes resources throughout the platform.
In Kubeflow, the TFX components exist in the form of reusable tasks, implemented as containers. The management of the lifecycle of these components is achieved through Argo, the orchestrator of KF pipelines. Argo implements these workflows as kubernetes CRDs. In a workflow
spec we define the dag tasks, the TFX components as containers, the metadata which will be written in the metadata store, etc. The execution of these workflows is happening nicely using standard kubernetes resources like pods, as well as custom resource definitions like experiments
. That makes the implementation of the pipeline and the components language-agnostic, unline Airflow which implements the tasks in python only. These tasks and their lifecycle is then managed natively by kubernetes, without the need to use duct-tape solutions like Airflow's kubernetes-operator. Since everything is implemented as kubernetes resources, everything is a yaml and so the most Git friendly configuration you can find. Good luck trying to enforce version control in Airflow's dag directory.
The deployment and management of the model in production is done via KF serving using the CRD of inferenceservice
. It utilizes Istio's secure access to the models via its virtualservices
, serverless resources using Knative Serving's scale-from-zero pods
, revisions
for versioning, prometheus metrics
for observability, logs
in ELK for debugging and more. Running models in production could not be more SRE friendly than that.
On the topic of splitting training/serving between cloud and on-premise, the use of kubernetes is even more important, as it abstracts the custom infrastructure implementation of each provider, and so provides a unified environment to the developer/ml engineer.
QUESTION
How can I dump a pickle object with its own dependencies?
The pickle object is generally generated from a notebook.
I tried creating virtualenv
for the notebook to track dependencies, however this way I don't get only the imports of the pickle object but many more that's used in other places of the application, which is fine enough but not the best solution.
I'm trying to build a MLOps flow. Quick explanation: MLOps is a buzzword that's synonymous with DevOps for machine learning. There are different PaaS/SaaS solutions for it offered by different companies and they commonly solve following problems:
- Automation of creating web API's from models
- Handling requirements/dependencies
- Storing & running scripts used for model generation, model binary and data sets.
I'll skip the storage part and focus on the first two.
How I'm trying to achieveIn my case I'm trying to set up this flow using good old TeamCity where models are pickle objects generated by sk-learn. The requirements are:
- The dependencies must be explicitly defined
- Other pickle objects (rather than sk-learn) must be supported.
- The workflow for a data scientists will look like:
- Data scientist uploads the pickle model with
requirements.txt
. - Data scientist commits a definition file which look like this:
- Data scientist uploads the pickle model with
ANSWER
Answered 2020-Feb-28 at 02:21For such complex build steps I use a Makefile for on-prem system, and on cloud-based MLOps using something like AWS CodeBuild with sagemaker.
An example would be as follows for packaging dependencies and executing the below build steps would require three files your main.py containing driver function of your code, Pipfile containing dependencies for your virtualenv and models:
- main.py
QUESTION
I am trying to build a Django app that would use Keras models to make recommendations. Right now I'm trying to use one custom container that would hold both Django and Keras. Here's the Dockerfile I've written.
...ANSWER
Answered 2019-Jan-02 at 22:56It looks like tensorflow only publishes wheels (and only up to 3.6), and Alpine linux is not manylinux1
-compatible due to its use of musl
instead of glibc
. Because of this, pip
cannot find a suitable installation candidate and fails. Your best options are probably to build from source or change your base image.
QUESTION
I'm calling the BlueData MLOPS prediction API to get a score for my model, but I'm getting the following response:
...ANSWER
Answered 2019-Nov-23 at 12:20On closer inspection of my request, I noticed that I had the content type set to text/plain
:
QUESTION
I've created a MLOPS project on BlueData 4.0 and mounted the Project Repo (NFS) folder. I created the NFS service on Centos 7x as below:
...ANSWER
Answered 2019-Dec-02 at 21:39It appears the project repo is created with root as owner and no write permissions on group level.
To fix, you need to:
- create a notebook cluster
- open a Jupyter Terminal
sudo chmod -R 777 /bd-fs-mnt/nfsrepo
(this only works if you create that cluster as tenant admin, as user you don't have sudo permission)
QUESTION
I am setting up deployment pipelines for our models and I wanted to support this scenario:
- User registers model in
test
AML workspace in test subscription, checks in deployment code/configs that references the model version (there is arequirements.txt
-like file that specifies the model ID - name and version) - Azure DevOps CI is triggered after code checkin to run
az ml model deploy
to a test environment. - User decides after that endpoint works well, wants to deploy to prod. In Azure DevOps, manually invokes a prod pipeline that will use the same checked-in code/configs (with the same referenced model):
- copy the model from the
test
AML workspace to a new registered model in theprod
AML workspace in a different subscription, with the same version - run
az ml model deploy
with different variables corresponding to theprod
env, but using the same checked-in AML code/configs
- copy the model from the
I've looked at the MLOps references but can't seem to figure out how to support step 3 in the above scenario.
I thought I could do an az ml model download
to download the model from the test
env and register it in the prod
env. The registration process automatically sets the version number so, e.g. the config that references myModel:12
is no longer valid since in prod
the ID is myModel:1
How can I copy the model from one workspace in one subscription to another and preserve the ID?
...ANSWER
Answered 2019-Aug-30 at 18:33You could use model tags to set up your own identifiers that are shared across workspace, and query models with specific tags:
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