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higlass | Fast , flexible and extensible genome browser

 by   higlass JavaScript Version: v1.11.7 License: MIT

 by   higlass JavaScript Version: v1.11.7 License: MIT

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kandi X-RAY | higlass Summary

higlass is a JavaScript library. higlass has no bugs, it has no vulnerabilities, it has a Permissive License and it has low support. You can install using 'npm i higlass' or download it from GitHub, npm.
HiGlass is a web-based viewer for datasets too large to view at once. It features synchronized navigation of multiple views as well as continuous zooming and panning for navigation across genomic loci and resolutions. It supports visual comparison of genomic (e.g., Hi-C, ChIP-seq, or bed annotations) and other data (e.g., geographic maps, gigapixel images, or abstract 1D and 2D sequential data) from different experimental conditions and can be used to efficiently identify salient outcomes of experimental perturbations, generate new hypotheses, and share the results with the community. A live instance can be found at http://higlass.io. A Docker container is available for running an instance locally, although we recommend using the higlass-manage package to start, stop and configure local instances. For documentation about how to use and install HiGlass, please visit http://docs.higlass.io.
Support
Support
Quality
Quality
Security
Security
License
License
Reuse
Reuse

kandi-support Support

  • higlass has a low active ecosystem.
  • It has 236 star(s) with 48 fork(s). There are 29 watchers for this library.
  • It had no major release in the last 12 months.
  • There are 222 open issues and 321 have been closed. On average issues are closed in 103 days. There are 43 open pull requests and 0 closed requests.
  • It has a neutral sentiment in the developer community.
  • The latest version of higlass is v1.11.7
higlass Support
Best in #JavaScript
Average in #JavaScript
higlass Support
Best in #JavaScript
Average in #JavaScript

quality kandi Quality

  • higlass has 0 bugs and 0 code smells.
higlass Quality
Best in #JavaScript
Average in #JavaScript
higlass Quality
Best in #JavaScript
Average in #JavaScript

securitySecurity

  • higlass has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.
  • higlass code analysis shows 0 unresolved vulnerabilities.
  • There are 0 security hotspots that need review.
higlass Security
Best in #JavaScript
Average in #JavaScript
higlass Security
Best in #JavaScript
Average in #JavaScript

license License

  • higlass is licensed under the MIT License. This license is Permissive.
  • Permissive licenses have the least restrictions, and you can use them in most projects.
higlass License
Best in #JavaScript
Average in #JavaScript
higlass License
Best in #JavaScript
Average in #JavaScript

buildReuse

  • higlass releases are available to install and integrate.
  • Deployable package is available in npm.
  • Installation instructions are not available. Examples and code snippets are available.
  • higlass saves you 5040 person hours of effort in developing the same functionality from scratch.
  • It has 10604 lines of code, 13 functions and 397 files.
  • It has high code complexity. Code complexity directly impacts maintainability of the code.
higlass Reuse
Best in #JavaScript
Average in #JavaScript
higlass Reuse
Best in #JavaScript
Average in #JavaScript
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higlass Key Features

Fast, flexible and extensible genome browser.

Development

copy iconCopydownload iconDownload
npm clean-install
npm run start

Tests

copy iconCopydownload iconDownload
npm run test-watch

API

copy iconCopydownload iconDownload
<!DOCTYPE html>
<head>
  <meta charset="utf-8">
  <title>Minimal Working Example · HiGlass</title>
  <link rel="stylesheet" href="https://maxcdn.bootstrapcdn.com/bootstrap/3.3.7/css/bootstrap.min.css">
  <link rel="stylesheet" href="https://unpkg.com/higlass@1.6.6/dist/hglib.css">

  <style type="text/css">
    html, body {
      width: 100vw;
      height: 100vh;
      overflow: hidden;
    }
  </style>

  <script crossorigin src="https://unpkg.com/react@16/umd/react.production.min.js"></script>
  <script crossorigin src="https://unpkg.com/react-dom@16/umd/react-dom.production.min.js"></script>
  <script crossorigin src="https://unpkg.com/pixi.js@5/dist/pixi.min.js"></script>
  <script crossorigin src="https://unpkg.com/react-bootstrap@0.32.1/dist/react-bootstrap.min.js"></script>
  <script crossorigin src="https://unpkg.com/higlass@1.6.6/dist/hglib.min.js"></script>
</head>
<body></body>
<script>
const hgApi = window.hglib.viewer(
  document.body,
  'https://higlass.io/api/v1/viewconfs/?d=default',
  { bounded: true },
);
</script>
</html>

Community Discussions

No Community Discussions are available at this moment for higlass.Refer to stack overflow page for discussions.

No Community Discussions are available at this moment for higlass.Refer to stack overflow page for discussions.

Community Discussions, Code Snippets contain sources that include Stack Exchange Network

Vulnerabilities

No vulnerabilities reported

Install higlass

You can install using 'npm i higlass' or download it from GitHub, npm.

Support

For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .

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