pipelines | Neuroimgaing data processing pipelines used in the lab | Continous Integration library

 by   NeuroanatomyAndConnectivity Python Version: v2.0 License: MIT

kandi X-RAY | pipelines Summary

kandi X-RAY | pipelines Summary

pipelines is a Python library typically used in Devops, Continous Integration applications. pipelines has no bugs, it has no vulnerabilities, it has a Permissive License and it has low support. However pipelines build file is not available. You can download it from GitHub.

Neuroimgaing data processing pipelines used in the lab
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            kandi-support Support

              pipelines has a low active ecosystem.
              It has 11 star(s) with 20 fork(s). There are 3 watchers for this library.
              OutlinedDot
              It had no major release in the last 12 months.
              pipelines has no issues reported. There are no pull requests.
              It has a neutral sentiment in the developer community.
              The latest version of pipelines is v2.0

            kandi-Quality Quality

              pipelines has 0 bugs and 0 code smells.

            kandi-Security Security

              pipelines has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.
              pipelines code analysis shows 0 unresolved vulnerabilities.
              There are 0 security hotspots that need review.

            kandi-License License

              pipelines is licensed under the MIT License. This license is Permissive.
              Permissive licenses have the least restrictions, and you can use them in most projects.

            kandi-Reuse Reuse

              pipelines releases are available to install and integrate.
              pipelines has no build file. You will be need to create the build yourself to build the component from source.

            Top functions reviewed by kandi - BETA

            kandi has reviewed pipelines and discovered the below as its top functions. This is intended to give you an instant insight into pipelines implemented functionality, and help decide if they suit your requirements.
            • Create lsd restful workflow
            • Create workflow
            • Creates a workflow pipeline
            • Create workflow for motion correction
            • Return a workflow object
            • Create a warming workflow
            • Create a neural workflow
            • Create normalization pipeline
            • Run Nifti1
            • Compute the mask for the given parameter
            • Create a new conversion workflow
            • Creates a pipeline pipeline
            • Wrap a subject to a workflow
            • Runs the ROI model
            • Retrieve a list of vertices for a given heuristic
            • Run nifti1 image
            • Returns a list of files in the given directory
            • Make consensus matrix
            • Get the mask for a given parameter
            • Convert a nifti matrix to a 3D nifti1 image
            • Convert a cluster file to a list of masks
            • Find the cluster map
            Get all kandi verified functions for this library.

            pipelines Key Features

            No Key Features are available at this moment for pipelines.

            pipelines Examples and Code Snippets

            No Code Snippets are available at this moment for pipelines.

            Community Discussions

            QUESTION

            Azure Pipelines local agent failing to connect with SSL error
            Asked 2022-Mar-29 at 19:29

            We have an on premise server (Windows Server 2012 R2) with an Azure Pipelines agent running on it. Today (31st Jan 2022) this agent could not longer connect to our Azure DevOps organisation.

            Judging by the log files, I assume this is because it is trying to connect with an older TLS version, which as of today is no longer available - https://devblogs.microsoft.com/devops/azure-devops-services-to-require-tls-1-2/

            So I followed the instructions on how to make sure TLS 1.2 was enabled, and confirmed my settings in the registry editor and by running the PowerShell script suggested here - https://docs.microsoft.com/en-us/security/engineering/solving-tls1-problem#update-windows-powershell-scripts-or-related-registry-settings

            All seems ok, yet it still fails to connect with the same issue. The machine has been restarted as well. If I try the URL it is requesting in the in built Internet Explorer browser, it fails, but with Chrome it succeeds, so it must still be trying to connect with TLS 1.2, but I don't know why. I've tried reinstalling the agent (with the latest build) as well but it fails on the same error. Any suggestions?

            ...

            ANSWER

            Answered 2022-Jan-31 at 23:27

            Enabling below Cyphers with IISCrypto on the server helped us fix the issue

            Cipher Suites

            TLS 1.2 (suites in server-preferred order) TLS

            • _DHE_RSA_WITH_AES_256_GCM_SHA384 (0x9f) DH 2048 bits FS 256 TLS
            • DHE_RSA_WITH_AES_128_GCM_SHA256 (0x9e) DH 2048 bits FS 128

            This from Vijay's solution

            Source https://stackoverflow.com/questions/70929356

            QUESTION

            Github pages fails to deploy
            Asked 2022-Mar-28 at 20:02

            This error is popping-up intermittently while trying to deploy my github webpages. I have no clue what to do, I already deleted and recreated the repository but the error persists. I have the same problem for all my github pages repositories.

            Here is one repository example: https://github.com/cnftstats/borgs

            ...

            ANSWER

            Answered 2022-Mar-18 at 17:45

            [It was a bug of GitHub, happens to all its users---date: 18/03/2022]

            It happens to me today too.. :(

            Maybe is a bug of GitHub pages: https://github.com/actions/deploy-pages/issues/22

            https://github.community/t/pages-deploy-wedged-incorrect-request-failed-due-to-in-progress-deployment/234793/4

            Source https://stackoverflow.com/questions/71511767

            QUESTION

            React-app deployment to Github Pages - Build Successful but deploy failed
            Asked 2022-Mar-18 at 02:58

            Initially, I deployed my React app (created with create-react-app) to Github Pages and it works fine. However, after a few changes to the src files, I wanted to update the website so I decided to re-deploy the app using npm run deploy and it finishes with Published being printed at the end of the command. On Github, the actions shows that the build is successful, but it's not able to deploy, giving me an error code of 400.

            Complete error log from Github is as follow:

            ...

            ANSWER

            Answered 2022-Mar-17 at 06:37

            I haven't found a solution, but I have a workaround. If you go to the last working workflow run in the Actions tab (look for a green checkmark), you can click Re-run all jobs, which should deploy your webpage for you, including the latest changes.

            Hope this works for the time being until there is a better solution!

            Source https://stackoverflow.com/questions/71507460

            QUESTION

            NPM install task failing in Azure Devops, same code worked previously
            Asked 2022-Mar-12 at 12:38

            I have yaml pipeline running a build in Azure Devops. The Npm@1 task has started failing this morning. npm install works locally with npm version 6.14.5 and it's all green lights on npm Status.

            ...

            ANSWER

            Answered 2021-Dec-02 at 13:14

            I still don't know why this started failing all of a sudden but I have resolved the problem by updating node-sass to version 6.0.1.

            Source https://stackoverflow.com/questions/70199030

            QUESTION

            Azure, .Net, Cobertura - ##[warning]Multiple file or directory matches were found
            Asked 2022-Feb-16 at 10:41

            Hi i am trying to get code coverage with .net5 in azure pipeline.

            Run tests (not entire file)

            ...

            ANSWER

            Answered 2021-Aug-25 at 08:52

            Please replace your PublishCodeCoverageResults with following steps:

            Source https://stackoverflow.com/questions/68919661

            QUESTION

            "Configuring the trigger failed, edit and save the pipeline again" with no noticeable error and no further details
            Asked 2022-Feb-16 at 10:33

            I have run in to an odd problem after converting a bunch of my YAML pipelines to use templates for holding job logic as well as for defining my pipeline variables. The pipelines run perfectly fine, however I get a "Some recent issues detected related to pipeline trigger." warning at the top of the pipeline summary page and viewing details only states: "Configuring the trigger failed, edit and save the pipeline again."

            The odd part here is that the pipeline works completely fine, including triggers. Nothing is broken and no further details are given about the supposed issue. I currently have YAML triggers overridden for the pipeline, but I did also define the same trigger in the YAML to see if that would help (it did not).

            I'm looking for any ideas on what might be causing this or how I might be able to further troubleshoot it given the complete lack of detail that the error/warning provides. It's causing a lot of confusion among developers who think there might be a problem with their builds as a result of the warning.

            Here is the main pipeline. the build repository is a shared repository for holding code that is used across multiple repos in the build system. dev.yaml contains dev environment specific variable values. Shared holds conditionally set variables based on the branch the pipeline is running on.

            ...

            ANSWER

            Answered 2021-Aug-17 at 14:58

            I think I may have figured out the problem. It appears that this is related to the use of conditionals in the variable setup. While the variables will be set in any valid trigger configuration, it appears that the proper values are not used during validation and that may have been causing the problem. Switching my conditional variables to first set a default value and then replace the value conditionally seems to have fixed the problem.

            It would be nice if Microsoft would give a more useful error message here, something to the extent of the values not being found for a given variable, but adding defaults does seem to have fixed the problem.

            Source https://stackoverflow.com/questions/68819306

            QUESTION

            GitLab Runner fails to upload artifacts with "invalid argument" error
            Asked 2022-Feb-08 at 15:22

            I'm completely new to trying to implement GitLab's CI/CD pipelines, but it's been going quite well. In fact, for my ASP.NET project, if I specify a Publish Profile in the msbuild command that uses Web Deploy, it actually deploys the code successfully to the web server.

            However, I'm now wanting to have the "build" job create artifacts which are uploaded to GitLab that I can then subsequently deploy. We're using a self-hosted instance of GitLab, for which I'm not an admin, but I can speak to the admin if I know what I'm asking for!

            So I've configured my gitlab-ci.yml file like this:

            ...

            ANSWER

            Answered 2022-Feb-08 at 15:22

            After countless hours working on this, it seems that ultimately the issue was that our internal Web Application Firewall was blocking some part of the transfer of artefacts to the server, or the response back from it. With the WAF reconfigured not to block traffic from the machine running the GitLab Runner, the artefacts are successfully uploaded and the job succeeds.

            This would have been significantly easier to diagnose if the logging from GitLab was better. As per my comment on this issue, it should be possible to see the content of the response from the GitLab server after uploading artefacts, even when the response code is 200.

            What's strange - and made diagnosing the issue even harder - is that when I worked through the issue with the admin of our GitLab instance, digging through logs and running it in debug mode, the artefact upload process was uploading something successfully. We could see, for example, the GitLab Runner's log had been uploaded to the server. Clearly the WAF's blocking was selective and didn't block everything in both directions.

            Source https://stackoverflow.com/questions/70880840

            QUESTION

            Azure Pipelines Xamarin.Forms iOS build fails with error MSB4057: The target "_IsProjectRestoreSupported" does not exist in the project
            Asked 2022-Jan-26 at 09:39

            We have Xamarin.Forms solution with iOS and UWP projects. We use Azure pipelines to build the iOS project. Until yesterday everything was working fine. Now the build fails at the NuGet Restore step with the error:

            ##[error]The nuget command failed with exit code(1) and error(/Users/runner/work/1/s/"MyProjectName.UWP".csproj : error MSB4057: The target "_IsProjectRestoreSupported" does not exist in the project.

            We can see that the problem occurs when trying to restore NuGet packages for the UWP project on the Mac OS build host. Image: macOS-11

            Workaround will be to exclude it from the solution, but we are using it for testing purposes and this is not a good option for us.

            ...

            ANSWER

            Answered 2022-Jan-26 at 09:39
            • Updated Answer This can be resolved using MSBuild task instead, as the collogues mentioned below. However, in my case this still lead to the same error. After investigating the pipeline. The root cause has been identified: Both in MSBuild@1 and XamariniOS@2 tasks you should target the specific iOS Project and not the solution file, like so:

            " - task: MSBuild@1 inputs: solution: 'PathToIosProject/myproject.iOS.csproj' configuration: '$(BuildConfiguration)' msbuildArguments: /t:restore

            " - task: XamariniOS@2 inputs: solutionFile: PathToIosProject/myproject.iOS.csproj' configuration: '$(BuildConfiguration)' packageApp: true signingIdentity: $(APPLE_CERTIFICATE_SIGNING_IDENTITY)

            • Old Answer

            We have managed to resolve the issue. The root cause of it seems to be an update to the mono framework in the MacOS pipeline build agent. In order to fix it, we need a script for downloading and installing an older version of the mono framework as a first step of the build pipeline like so: link to the pipeline tasks photo

            This is the code of the bash scrip used in the task:

            #!/bin/bash set -ex

            MONO_MACOS_PKG_DOWNLOAD_URL='https://download.mono-project.com/archive/6.12.0/macos-10-universal/MonoFramework-MDK-6.12.0.100.macos10.xamarin.universal.pkg'

            mkdir -p /tmp/mono-install cd /tmp/mono-install

            mono --version

            wget -q -O ./mono-installer.pkg "$MONO_MACOS_PKG_DOWNLOAD_URL"

            sudo installer -pkg ./mono-installer.pkg -target /

            mono --version

            ls -alh /Library/Frameworks/Mono.framework/Versions/Current

            Source https://stackoverflow.com/questions/69821924

            QUESTION

            Send argument to yml anchor for a step in bitbucket-pipelines.yml
            Asked 2022-Jan-21 at 19:45

            I would like to send arguments when I call an anchor with bitbucket pipelines

            Here is the file I am using, I have to call after-script because I need to push to a certain S3 bucket

            ...

            ANSWER

            Answered 2022-Jan-21 at 19:45

            To the best of my knowledge, you can only override particular values of YAML anchors. Attempts to 'pass arguments' won't work.

            Instead, Bitbucket Pipelines provide Deployments - an ad-hoc way to assign different values to your variables depending on the environment. You'll need to create two deployments (say, dev and uat), and use them when referring to a step:

            Source https://stackoverflow.com/questions/68976555

            QUESTION

            502 Error: Bad Gateway on Azure App Service with IronPDF
            Asked 2022-Jan-10 at 08:54

            I am attempting to get IronPDF working on my deployment of an ASP.NET Core 3.1 App Service. I am not using Azure Functions for any of this, just a regular endpoints on an Azure App Service -which, when a user calls it, the service generates and returns a generated PDF document.

            When running the endpoint on localhost, it works perfectly- generating the report from the HTML passed into the method. However, once I deploy it to my Azure Web App Service, I am getting a 502 - Bad Gateway error, as attached (displayed in Swagger for neatness sake).

            Controller:

            ...

            ANSWER

            Answered 2021-Dec-14 at 02:19

            App Service runs your apps in a sandbox and most PDF libraries will fail. Looking at the IronPDF documentation, they say that you can run it in a VM or a container. Since you already are using App Service, simply package your app in a container, publish it to a container registry and configure App Service to run it.

            Source https://stackoverflow.com/questions/70341723

            Community Discussions, Code Snippets contain sources that include Stack Exchange Network

            Vulnerabilities

            No vulnerabilities reported

            Install pipelines

            You can download it from GitHub.
            You can use pipelines like any standard Python library. You will need to make sure that you have a development environment consisting of a Python distribution including header files, a compiler, pip, and git installed. Make sure that your pip, setuptools, and wheel are up to date. When using pip it is generally recommended to install packages in a virtual environment to avoid changes to the system.

            Support

            For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .
            Find more information at:

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