ASIS | Associatively Segmenting Instances and Semantics in Point Clouds, CVPR 2019 | Machine Learning library

Edit:

Try myplot() %>% print(), perhaps. You need to actually send the plots to the output with ggplot2.

Sorry for not seeing it earlier, this is the real crux: the reason that the plots came out last, and at all, was because they were the output of the map function so they were being stored by map and output as a group after all the processing.

Original thoughts:

I often interleave results in similar ways. I believe your issue may be related to not having enough "\n"s. When writing markdown normally you would leave a line open between paragraphs, so here the markdown you are generating programmatically must have "\n\n" to indicate the end of the current line and the open line below. That also applies after the plot and after the results.

On each iteration, you are inadvertently rewriting over the same object, repeatedly. Instead, you can iterate over the values in gene.list$entrez using lapply

You can do it with message() if you set the chunk option not to include messages in the document. For example,

If you use \centering, you'll avoid the extra vertical spacing from the center environment:

You need to use flextable_to_rmd().

I had to remove spaces from your code, but this works. I commented out some of the vertical space. Because of the page size this automatically set two per page. (Although, I did add \newpage in R Markdown before the chunk so the title and all that wouldn't be on the same page as the forms.

If you wanted to enforce the next page, you can use the if statement commented out at the end to add \\newpage to every other form. (It's checking to see if i is even or odd by looking for a modulo AKA remainder.)

In principle, your example looks fine but it is hard to tell for sure because some of the code markup is not preserved exactly here on StackOverflow.

My guess is that there is a missing space or line break somewhere. This may have the effect that either the first or last item from the question or answer list is not recognized correctly. R/exams has been improved over the last versions (including the current devel version on R-Forge) to avoid such issues but apparently not enough for your original file.

I have set up the file mc1.Rmd from your question (see below for the full R/Markdown code). And using this both

I think seq_along(df_id_filtered) is not the correct choice here if you want to loop over all the ID's. df_id_filtered is dataframe and seq_along over it would iterate over the columns. Since you have 2 columns in your data it runs only for 2 ID's.

You can instead try -

Use format():