dredge | A Python package for assisting with data mining work
kandi X-RAY | dredge Summary
kandi X-RAY | dredge Summary
The MIT License (MIT). Copyright (c) 2013 Adam Mechtley.
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Top functions reviewed by kandi - BETA
- Batch download .
- do multi - parse_to_csv
- Dumps data into csv
- Merges csv files into a single file .
- Perform a multi - process .
- Sort a list of file paths to load .
- Return a urllib2 opener .
- Returns a tuple of slices for multiprocessing .
- Return the number of cores to use .
dredge Key Features
dredge Examples and Code Snippets
Community Discussions
Trending Discussions on dredge
QUESTION
I tried to cluster my dataset using K-mean, but there is a categorical data in column 9; so when I ran k-mean it had an error like this:
...ANSWER
Answered 2021-Dec-17 at 17:31To solve your specific issue, you can generate dummy variables to run your desired clustering.
One way to do it is using the dummy_columns()
function from the fastDummies
package.
QUESTION
I ran multiple imputation to impute missing data for 2 variables of a data frame, then I got a new data frame (with 2 columns for 2 imputed variables).
Now, I want to replace the 2 columns in the original data frame with the two newly imputed columns from my new dataframe. What should I do?
Original data frame new data frame for imputed variables
This is the code I used. Only 2 columns in this data frame are missing data, so I only imputed those two. Is that ok? Can you please suggest me a better way?
...ANSWER
Answered 2021-Dec-14 at 22:53Updated
As @dcarlson recommended, you can run mice
on the entire dataframe, then you can use complete
to get the whole output dataframe. Then, you can join the new data with your original dataframe.
QUESTION
I have a global moel with two smoothed terms and two random effects.
...ANSWER
Answered 2021-Jul-26 at 10:48This is because you have used quasibinomial
family, which does not give a log-likelihood, and so no AIC can be calculated. You might try bam
rather than gam
, since this is such a large dataset.
QUESTION
Basically I have a table and a user can add rows. Depending on row type, they are added a little differently. A standard row is always added by .append(), but an "instruction" row should always be added after the last row that was created or modified.
...ANSWER
Answered 2020-Dec-09 at 13:16As your varialble newRow
is a string, when you do:
QUESTION
So I have a JSON file which I have loaded into a dictionary. It has 8 different keys that it is storing information for. I am trying to create a search engine that returns the recipe that contains all the words in the search string and returns them. I change the string into a list of "tokens" that I will be used for searching.
Here is an example of some of the information stored in the dictionary. A recipe should be returned as long as the tokens are located in either the title, categories, ingredients or directions.
...ANSWER
Answered 2020-Nov-03 at 07:26I think what you want is the following:
QUESTION
I have produced an averaged GLM model (to find the habitat preference of a species), and I want to graph the shape of the relationship for each of the most important variables, “x1” and “x3” (understorey cover and canopy cover), against my response variable, “species” (species presence). I have been using the “predict”(predict.averaging) function, but I keep running into the same error:
Error in eval(predvars, data, env) : object 'x3' not found
More details and code:
My dataset, “data.csv”, is a table with 13 rows. The first 12 rows are scaled habitat variables (10 continuous, 2 categorical), named x1-x12. Row 13 is the response variable – species presence/absence (1 or 0). Here is my code:
library(MuMIn)
dataset <- read.csv(file = 'data.csv', stringsAsFactors = FALSE)
options(na.action = "na.fail")
m1 <- glm(species ~ x1 + x2 + x3 + x4 + x5 + x6 + x7 + x8 + x9 + x10 + x11 + x12, data=Dataset, family=binomial())
ms1 <- dredge(m1)
#Running different model combinations
d2subset <- get.models(ms1, subset = delta < 2)
#Models with delta AIC <2 are selected.
avgm <- model.avg(d2subset)
#DeltaAIC<2 models are averaged.
summary(avgm)
#Shows 'x1' to be the most significant variable.
The following code, attempting to predict from the averaged model, causes an error:
predict(avgm, data.frame(dataset$x1), se.fit = TRUE, type = "link", backtransform = TRUE, full = TRUE)
Errors produced:
Error in predict.averaging(avgm, dataset$x1), se.fit = TRUE, :
'predict' for models '2211', '163', '147', '179', '2227', '183', '131', '2195', '167', '2275', '227', '243', '211', '148', '1171', '435', '151', '3235', '247', '2215', '155', '2231', '659', '2291', '2219' and '171' caused errors.
In addition: There were 26 warnings (use warnings() to see them)
Warning messages:
1: In eval(predvars, data, env) : object 'x3' not found
2-13: In eval(predvars, data, env) : object 'x3' not found
14: In eval(predvars, data, env) : object 'x5' not found
15-26: In eval(predvars, data, env) : object 'x3' not found
I have looked into this a lot, but I still don't understand where the error comes from or how to work around it. I would be very grateful for any suggestions. Thank you!
...ANSWER
Answered 2020-Sep-10 at 14:53Since the model includes covariates x1
-x12
you need to include all variables for predict
, not just x1
.
QUESTION
I'm trying to exponentiate coefficients and standard errors from multiple Poisson models from a MuMIn::dredge
object to use with texreg::screenreg
. In the case of one model we can do this:
ANSWER
Answered 2020-Jul-29 at 13:57texreg
's extract
method for the "averaging" object returns a list of texreg
objects, with one element for each model. You need to apply @coef
and @se
to each element. For example:
QUESTION
I want to automate turning lists of names into regression equations for use in the Dredge command from the MuMIn package.
Making this:
...ANSWER
Answered 2020-Apr-03 at 04:24You could use reformulate
to construct the formula
QUESTION
I have a global model using a GLMM with 5 fixed effects with interactions, as well as two random effects.
...ANSWER
Answered 2020-Feb-24 at 16:58Yes.
Here's an experimental illustration that dredge()
drops only fixed effects, leaving the null model as (intercept + all random effects)
QUESTION
I am building a small website example project using HTML, CSS and JS. I have a button that after click should download PDF example data (for now it is not necessary where to save the documents).
The problem: How to I download PDF documents using an HTML
button?
I am using reactstrap Card for each component I would like to download the data. This is an example only, and the real website will contain for each card a button with specific downloadable information.
Below SideBar.js
:
ANSWER
Answered 2020-Feb-04 at 15:34This isn't a react specific issue. But if you want to make it more React-like, you could do:
Community Discussions, Code Snippets contain sources that include Stack Exchange Network
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Install dredge
You can use dredge like any standard Python library. You will need to make sure that you have a development environment consisting of a Python distribution including header files, a compiler, pip, and git installed. Make sure that your pip, setuptools, and wheel are up to date. When using pip it is generally recommended to install packages in a virtual environment to avoid changes to the system.
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