ecg | level arrhythmia detection and classification in ambulatory | Machine Learning library

by awni Python Version: Current License: GPL-3.0

X-Ray Key Features Code Snippets Community Discussions(10)Vulnerabilities Install Support

kandi X-RAY | ecg Summary

ecg is a Python library typically used in Artificial Intelligence, Machine Learning, Deep Learning, Tensorflow, Keras applications. ecg has no bugs, it has no vulnerabilities, it has build file available, it has a Strong Copyleft License and it has low support. You can download it from GitHub.

Cardiologist-level arrhythmia detection and classification in ambulatory electrocardiograms using a deep neural network

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Support

ecg has a low active ecosystem.

It has 562 star(s) with 255 fork(s). There are 44 watchers for this library.

It had no major release in the last 6 months.

There are 8 open issues and 4 have been closed. On average issues are closed in 182 days. There are 13 open pull requests and 0 closed requests.

It has a neutral sentiment in the developer community.

The latest version of ecg is current.

Quality

ecg has 0 bugs and 0 code smells.

Security

ecg has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

ecg code analysis shows 0 unresolved vulnerabilities.

There are 0 security hotspots that need review.

License

ecg is licensed under the GPL-3.0 License. This license is Strong Copyleft.

Strong Copyleft licenses enforce sharing, and you can use them when creating open source projects.

Reuse

ecg releases are not available. You will need to build from source code and install.

Build file is available. You can build the component from source.

Installation instructions, examples and code snippets are available.

Top functions reviewed by kandi - BETA

kandi has reviewed ecg and discovered the below as its top functions. This is intended to give you an instant insight into ecg implemented functionality, and help decide if they suit your requirements.

Train the model
Generate a data generator
Save an example
Convert the input to a categorical array
Pad an array with a given value
Apply normalization
Predict class
Load preproc
Loads all the labels in the given path
Generates a data generator
Make JSON file
Load a train and dev dataset
Build a blacklist
Get all records in a given path
Split the dataset into train and dev
Construct test dataset
Load review ID from epi file
Save examples to file
Extract data and annotation
Extract the annotation
Extract the wave at the given index
Splits the dataset into train and dev features

Get all kandi verified functions for this library.

ecg Key Features

No Key Features are available at this moment for ecg.

ecg Examples and Code Snippets

No Code Snippets are available at this moment for ecg.

Community Discussions

Trending Discussions on ecg

Storing filter coefficients in python

How to read .dat file in MATLAB

Holoviews plot with horizontal scrollbar?

Properly format 3d subplots in python

numpy.fromfile seems to be unable to read large files

How to split a Series into time intervals? (python)

Nexus can not download dependencies of spring-boot

Multiple live plot GUI using pyqtgraph and PyQt5

Chaquopy Android Wrapper

How to calculate stdev inside a For Loop with conditions in Python

QUESTION

Storing filter coefficients in python

Asked 2022-Mar-27 at 11:36

I have one pythonfile which fetches live data from an ECG device, and sends that to a website. The samplingfrequency of the ECG device is 200 Hz, and the python code fetches this data every second. I want to filter this data, so for every batch (of 1 second) I call another python file which contains my filters. Every filter have some coefficients that it finds from for example scipy.signal.butter(order, norm_cut, btype='low', analog=False, output='ba'), but the coefficients will always stay the same. So my questions is, is there a way to just store these cooeficents as global variable across the files? So its doesnt calculate these every second it gets called.

The code structure is something like this: Main.py

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ANSWER

Answered 2022-Mar-27 at 04:17

You can store the filter coefficients in file-level global variables (example below).

I suggest using SOS-form instead of ba-form; SOS-form has better numerical properties.

If you're processing data in 1s chunks, but you're not dropping any data, look into the initial condition input and (corresponding "final condition" output) to lfilter and sosfilt

Example of code storing coefficients:

Source https://stackoverflow.com/questions/71628736

QUESTION

How to read .dat file in MATLAB

Asked 2022-Mar-14 at 14:40

I am trying to read an ECG signal from PTB dataset, the file extension is ".dat" ,i am using Matlab function for that:

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ANSWER

Answered 2022-Mar-14 at 14:40

The file extension .dat can be used for many different types of binary data file and doesn't tell you what format the data is in.

By searching on 'PTB dataset` I found the information that the data files in this dataset are in 'WaveForm DataBase (WFDB) format', and by searching mathworks.com for 'WFDB' I found a few links including a toolbox for handling WFDB files. Try this toolbox, and update your question if it doesn't solve your problem.

Source https://stackoverflow.com/questions/71449565

QUESTION

Holoviews plot with horizontal scrollbar?

Asked 2022-Feb-23 at 18:47

I would like to realize a holoviews plot with a scrollbar for the time/x axis.

In detail, I want to plot a long ecg signal (20 minutes) and be able to display a frame of e.g. 10 seconds with the possibility to scroll along the entire signal.

Is there a way to realize this? Thank you!

Example

...

ANSWER

Answered 2022-Feb-23 at 18:47

There are at least two options you should know about.

1. Option

Enable the scrolling by mouse. For this you have to activate the tool xwheel_pan for your figure.

See this very basic example:

Source https://stackoverflow.com/questions/71239739

QUESTION

Properly format 3d subplots in python

Asked 2022-Feb-15 at 18:05

So I have 8 3d plots (7 3d plots and one 2d plot)

I want to position them in 4 x 2 format. Here is my code for it:

...

ANSWER

Answered 2022-Feb-15 at 12:19

There is something wrong with how you use rows, columns and index in add_subplot. I hope this here helps:

Source https://stackoverflow.com/questions/71125893

QUESTION

numpy.fromfile seems to be unable to read large files

Asked 2022-Jan-12 at 21:45

I wanted to write some very simple python helper tool for my project which is reading binary data from an ECG record. I have found somewhere that numpy.fromfile is the most appropriate tool to approach it, so I wrote:

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ANSWER

Answered 2022-Jan-12 at 21:45

Numpy reads correctly your file. To avoid a long display, numpy uses the dots:

Source https://stackoverflow.com/questions/70688685

QUESTION

How to split a Series into time intervals? (python)

Asked 2021-Dec-01 at 22:53

I have this dataframe:

And I should split the rows of the ''Time.s'' column into intervals, calculate the average of each interval, and finally the deviation of each average.

I can't split the lines that have Volt.mv > 0.95 into a group for each second. I tried with GroupBy, but it creates problems with the second table:

I used this code, calculating the average directly, but I certainly did something wrong:

...

ANSWER

Answered 2021-Dec-01 at 22:53

Before doing the groupby, you need to map Time.s to an interval. Otherwise each group will have only a single row (most of the time).

Here is how to group into intervals of 0.1 seconds and compute the mean and standard deviation for each interval:

Source https://stackoverflow.com/questions/70171004

QUESTION

Nexus can not download dependencies of spring-boot

Asked 2021-Nov-22 at 10:45

I am using a nexus, which i did not configure. I log in with remote desktop on the system that runs windows server 2012. When i want to build my spring-boot application and i run the goal mvn clean package it downloands several dependencies and then fails with a connection refused error. I do not understand this. Why was is possible to download the first few, but not the spring-boot-starter-aop jar? What connection is refused? The one that is used to download the otheres? Here is my error report:

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ANSWER

Answered 2021-Nov-22 at 10:45

It is not downloading any of them.

If you look at the order, it is actually failing for the first one Downloading: http://192.168.1.142:8081/nexus/content/groups/public/org/aspectj/aspectjweaver/1.9.6/aspectjweaver-1.9.6.pom.

It is telling you it is downloading, but then during the first attempt it fails to connect.

My suggestion is to try the URL on your browser without maven first to see if you can access it: http://192.168.1.142:8081/nexus/content/groups/public/ in the browser

If download was successfull of any of those dependencies, you would see (downloading/downloaded)

Downloading from cv-release: https://arm./springframework/session/spring-session-bom/2021.0.3/spring-session-bom-2021.0.3.pom

Downloaded from cv-release: https://arm./org/springframework/session/spring-session-bom/2021.0.3/spring-session-bom-2021.0.3.pom (2.7 kB at 15 kB/s)

Source https://stackoverflow.com/questions/70062781

QUESTION

Multiple live plot GUI using pyqtgraph and PyQt5

Asked 2021-Nov-17 at 03:14

I am trying to create a gui with several live plot EEG/ECG graphs (each plot on different axes). From what I understand, I need to create multiple PlotWidgets inside a grid layout.

I have created a live plot using pyqtgraph, below however I am unsure how to merge this into the GUI:

from pyqtgraph.Qt import QtGui, QtCore import pyqtgraph as pg import collections import random import time import math import numpy as np

...

ANSWER

Answered 2021-Nov-17 at 03:14

Here is an option where you can use both classes with minimal changes.

Change the DynamicPlotter constructor to accept a PlotWidget as a argument instead of creating a new one, since they are created and added to a layout in Ui_Mainwindow. In the MainWindow class, create a DynamicPlotter object for each plot (and keep a persistent reference, in this case I added them to a list self.plots).

Source https://stackoverflow.com/questions/69993219

QUESTION

Chaquopy Android Wrapper

Asked 2021-Nov-15 at 10:23

Chaquopy Android I have to call the python file method with array data. then python file executes ECG Peak(PQRST) using neurokit2 and got this error.

code is properly work in pycharm. there is no TypeError

...

ANSWER

Answered 2021-Sep-01 at 19:44

Pandas added support for the string dtype in version 1.0. So change the pip section of your build.gradle file to install pandas==1.3.2, which we released for Chaquopy a few days ago.

Source https://stackoverflow.com/questions/68996540

QUESTION

How to calculate stdev inside a For Loop with conditions in Python

Asked 2021-Nov-12 at 17:06

I have a CSV file, structured in two columns: "Time.s", "Volt.mv". Example: 0, 1.06 0.0039115, 1.018 0.0078229, 0.90804

So, I have to return time values that exceed the threshold of 0.95 indicating the deviation of each value with respect to the average of that time interval.

I calculated the average like this:

...

ANSWER

Answered 2021-Nov-12 at 15:41

The issue is that you are setting each of the values to the last calculation of dev.

To do what you want with the for loop, you have to make two edits:

First, append the calculated dev to ecg_dev

Source https://stackoverflow.com/questions/69945335

Community Discussions, Code Snippets contain sources that include Stack Exchange Network

Vulnerabilities

No vulnerabilities reported

Install ecg

If you don't have virtualenv, install it with. Make and activate a new Python 2.7 environment. Install the requirements (this may take a few minutes). For CPU only support run. To install with GPU support run.

Support

For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .

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