selfish | finding differential chromatin interactions between two Hi | Machine Learning library

by ay-lab Python Version: Current License: MIT

X-Ray Key Features Code Snippets Community Discussions(10)Vulnerabilities Install Support

kandi X-RAY | selfish Summary

selfish is a Python library typically used in Artificial Intelligence, Machine Learning, Tensorflow applications. selfish has no bugs, it has no vulnerabilities, it has build file available, it has a Permissive License and it has low support. You can install using 'pip install selfish' or download it from GitHub, PyPI.

Selfish (Discovery of Differential Chromatin Interactions via a Self-Similarity Measure) is a tool by Abbas Roayaei Ardakany, Ferhat Ay (ferhatay@lji.org), and Stefano Lonardi. This Python implementation is currently maintained by Tuvan Gezer (tgezer@sabanciuniv.edu). The original MATLAB implementation by Abbas (roayaei@gmail.com) can be found at SELFISH is a tool for finding differential chromatin interactions between two Hi-C contact maps. It uses self-similarity to model interactions in a robust way. For more information read the full paper: Selfish: discovery of differential chromatin interactions via a self-similarity measure.

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Quality

Security

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Support

selfish has a low active ecosystem.

It has 13 star(s) with 3 fork(s). There are 1 watchers for this library.

It had no major release in the last 6 months.

There are 8 open issues and 7 have been closed. On average issues are closed in 38 days. There are no pull requests.

It has a neutral sentiment in the developer community.

The latest version of selfish is current.

Quality

selfish has no bugs reported.

Security

selfish has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

License

selfish is licensed under the MIT License. This license is Permissive.

Permissive licenses have the least restrictions, and you can use them in most projects.

Reuse

selfish releases are not available. You will need to build from source code and install.

Deployable package is available in PyPI.

Build file is available. You can build the component from source.

Installation instructions are not available. Examples and code snippets are available.

Top functions reviewed by kandi - BETA

kandi has reviewed selfish and discovered the below as its top functions. This is intended to give you an instant insight into selfish implemented functionality, and help decide if they suit your requirements.

Perform DCI analysis
Read a BEDMAT file
Read a map file
Get the mean and standard deviation of a matrix
Read a HiC file
Normalize a cmap
Read a multiple cooling matrix
Read a cool file
Read a bias file
Get the separator
Test if a character is a chr
Convert n to nearest integer
Inter - normalize a cmap
Parse command line arguments
Parse a PB value

Get all kandi verified functions for this library.

selfish Key Features

No Key Features are available at this moment for selfish.

selfish Examples and Code Snippets

No Code Snippets are available at this moment for selfish.

Community Discussions

Trending Discussions on selfish

How to parse certain numbers from a string using regex?

Proportion multiplication on fractions

How to add line breaker in array and make it right aligned

PHPWord not saving file in /tmp directory

Passing extra arguments to networkx graphviz_layout not working

function without argument doesnt work. but why?

How to return each string in a separate TouchableOpacity with FlatList?

Pagination for JSON data

Getting class data from BeautifulSoup

Strings analysis: splitting strings into n parts by percentage of words

QUESTION

How to parse certain numbers from a string using regex?

Asked 2021-May-11 at 11:13

i had an assignment where i have to parse certain numbers from a string in this fashion,

if I pass this string to a method the following strings for example:

*I bought 2 books in (2005), They were pretty good, but i didn't like the mention of god in it, 32(1-5), 214-443.

it should print Edition: 32, pages from 214 to 443

*have you read the book published in (2009), named The art of being selfish, look at page, 87, 104-105.

it should print Edition: 87, pages from 104 to 105

*Please take a look here in this link, you will find the, 10(3-4), 259-271.

it should print Edition: 10, pages from 259 to 271

*Someone help me here please in the look for it book, 5(1), 1-4

it should print Edition: 5, pages from 1 to 4

*Help needed (here), 8(4), 325-362.

it should print Edition: 8, pages from 325 to 362

I'm having trouble with the regex formatting since it is required.

solution

what i wrote in my solution

...

ANSWER

Answered 2021-May-10 at 19:12

i think you need several solutions. I think a little different regex are necessary. Here is a RegEx which will be helpful in further development.

(\d+).*?(\b\d+\b).*?(\b\d+)

Demo: https://regex101.com/r/iIlLLN/1

Source https://stackoverflow.com/questions/67474965

QUESTION

Proportion multiplication on fractions

Asked 2021-Mar-25 at 20:48

(I am a beginner i am very sorry if this question is unclear and selfish.) So i want to show if 2 fractions are proportions or not, and the 4 numbers need to be the user input. The program i use is Python IDLE. I just do not know how to multiply two numbers. What do i need to write? As an example, i will use the numbers a, b, c and d. I wanna say that if a multipied by d == b multiplied by c: print("This is a proportion") else: print("This is not a proportion"). I just don't know how to write the multiplication part. I apologize if i made any english mistakes. Can someone help me with this problem?

...

ANSWER

Answered 2021-Mar-25 at 13:41

if a*d == b*c:
    print("This is a proportion")
else:
    print("This is not a proportion")

Source https://stackoverflow.com/questions/66800677

QUESTION

How to add line breaker in array and make it right aligned

Asked 2020-Dec-31 at 07:48

I am noob in java script .Just made a small project that generates quotes. But i want that that the name of the person who gave the quote should be in next line and right aligned but cant figure out how to do that in an array line breaker tag does not work.

HTML

...

ANSWER

Answered 2020-Dec-31 at 07:48

Adding a tag can make a new line. Making the text aligned at the right need CSS.

Source https://stackoverflow.com/questions/65517771

QUESTION

PHPWord not saving file in /tmp directory

Asked 2020-Dec-27 at 13:45

I am trying to run PHPWord's basic example in here on my Mac.

I am using XAMPP as app server.

I only changed the require_once part and added sys_get_temp_dir() in front of the file name because of the "ZipArchive::close(): Failure to create temporary file: Permission denied" error as same as in this question.

My index.php file is as follows:

...

ANSWER

Answered 2020-Dec-27 at 13:45

(1) Please try changing

Source https://stackoverflow.com/questions/65466230

QUESTION

Passing extra arguments to networkx graphviz_layout not working

Asked 2020-Dec-03 at 19:13

I want to pass an extra argument to the graphviz_layout(), which I am doing, but it's not doing anything. I have also tried passing other arguments, but same problem.

It is correctly recognizing it, because if I change the argument I pass to something nonsensical I get an error.

I am referring to this documentation: https://graphviz.org/doc/info/attrs.html#d:rankdir

...

ANSWER

Answered 2020-Dec-03 at 19:13

There's a conflict between the rankdir argument you're providing and the 'root' argument. If you remove the latter, it should respect your ordering.

Because I don't have your data, I made a simple example:

Source https://stackoverflow.com/questions/65132163

QUESTION

function without argument doesnt work. but why?

Asked 2020-Nov-03 at 22:49

i want ask a simple question. i have 2 classes. i got many functions. i keep functions on class operationsOnFiles(), and ui elements on class UI_MainWindow(object). i use a btnSetRandomWallpaper button call settingRandomWallpaper() function with liste argument and it didnt work. so i used lambda there. then it works. i tried to do same thing with my other function updateList(). it doesnt have any argument. same errors and i used lambda there too. no error but no action too. am i missing a point? or something?

...

ANSWER

Answered 2020-Nov-03 at 22:44

first of all, you need to add the parameter self to the function.

Then you need to change the command of the ui-element from:

Source https://stackoverflow.com/questions/64671640

QUESTION

How to return each string in a separate TouchableOpacity with FlatList?

Asked 2020-Oct-16 at 08:05

I have got an array of string which I need to return in a FlatList. But I am not sure of how I can implement this idea. Can I do it in here? {item.answers} Or I should restructure my API in order to make it work the way I need it? Here is my code:

...

ANSWER

Answered 2020-Oct-16 at 08:05

This might help

Source https://stackoverflow.com/questions/64385000

QUESTION

Pagination for JSON data

Asked 2020-Sep-18 at 22:32

I have a large data set of quotes in JSON format e.g.

...

ANSWER

Answered 2020-Sep-18 at 22:32

You can use the event afterRender in order to move the pagination bar before the section card-list....so you can see it.

Your updated fiddle

The function changed:

Source https://stackoverflow.com/questions/63962350

QUESTION

Getting class data from BeautifulSoup

Asked 2020-May-27 at 04:57

I am trying to get class data from an HTML page using BeautifulSoup. Here is how the data looks like:

...

ANSWER

Answered 2020-May-27 at 04:57

try this,

Source https://stackoverflow.com/questions/62035478

QUESTION

Strings analysis: splitting strings into n parts by percentage of words

Asked 2020-May-27 at 01:50

I'd need to calculate the length of each string included in the list:

...

ANSWER

Answered 2020-May-27 at 01:29

Splitting text according to percents on punctuation marks

Source https://stackoverflow.com/questions/62033133

Community Discussions, Code Snippets contain sources that include Stack Exchange Network

Vulnerabilities

No vulnerabilities reported

Install selfish

You can install using 'pip install selfish' or download it from GitHub, PyPI.
You can use selfish like any standard Python library. You will need to make sure that you have a development environment consisting of a Python distribution including header files, a compiler, pip, and git installed. Make sure that your pip, setuptools, and wheel are up to date. When using pip it is generally recommended to install packages in a virtual environment to avoid changes to the system.

Support

For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .

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