mustache | scale Detection of Chromatin Loops | Genomics library
kandi X-RAY | mustache Summary
kandi X-RAY | mustache Summary
Mustache (Multi-scale Detection of Chromatin Loops from Hi-C and Micro-C Maps using Scale-Space Representation) is a tool by Abbas Roayaei Ardakany, Halil Tuvan Gezer, Stefano Lonardi and Ferhat Ay (ferhatay@lji.org).
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Top functions reviewed by kandi - BETA
- R Regression analysis
- Get the separator from a file
- Read a CMOLER file
- Read a cooler file
- Read HIC file
- Normalize a sparse matrix
- Read a pymipy csv file
- Read a file into a dictionary
- Test if c is a chr
- Process a block
- Return the indices of the diagonal elements
- Compute the difference between two contours
- Compute a mustache variant
- Parse HiC - C header
- Read a null - terminated string from a file - like object
- Parse command line arguments
- Parse PB value
mustache Key Features
mustache Examples and Code Snippets
mustache -f ./data/chr21_5kb.RAWobserved -b ./data/chr21_5kb.KRnorm -ch 21 -r 5kb -pt 0.1 -o chr21_out.tsv -st 0.8
mustache -f ./4DNFIPC7P27B.hic -ch 1 2 X -r 1kb -pt 0.01 -o hic_out.tsv
wget ftp://cooler.csail.mit.edu/coolers/hg19/Rao2014-GM12878-
git clone https://github.com/ay-lab/mustache
conda env create -f ./mustache/environment.yml
conda activate mustache
1) python -m mustache -f ./mustache/data/chr21_5kb.RAWobserved -b ./mustache/data/chr21_5kb.KRnorm -ch 21 -r 5kb -o chr21_out5.tsv -
git clone https://github.com/ay-lab/mustache
cd mustache
./mustache/mustache.py ...arguments
Community Discussions
Trending Discussions on mustache
QUESTION
I have a gitlab.ci with this jobs:
...ANSWER
Answered 2021-May-27 at 14:02Add this line before RUN npm install
:
QUESTION
I'm walking through a tutorial on Spring Boot using Kotlin. I'm new to Kotlin and Spring, though I've already worked in a couple of different MVC style frameworks in other languages so get the gist.
Something that I don't get as I work through this tutorial is how in these controller methods:
...ANSWER
Answered 2021-May-22 at 06:21When you return a String
, it is used as a view name. This view name is then resolved into a View
implementation.
In the case of Mustache, Spring Boot auto-configures a MustacheViewResolver
bean. This bean is then picked up by Spring MVC and used to turn your "blog"
into a MustacheView
backed by your Mustache template. It is then combined with the Model
that was passed into your controller method and rendered.
QUESTION
I would like to pass the IP variable obtained from request.headers['x-forwarded-for']
in my server.js file to my webpage index.html and displaying it. I have tried passing it in the
I already red some questions on Google but nothing helped me ;(
here the full code: https://replit.com/@AnonHexo/wolframV3
Thanking in advance!
ANSWER
Answered 2021-May-17 at 21:06If you are using Moustache as a template engine (with Consolidate), please check its documentation about how the templating works: https://www.npmjs.com/package/mustache
I think what you need there is to use {{ ip }}
in the script like:
QUESTION
For a project I wanted to extend Elasticsearch and therefore need to use the package Symja. In the Github for Symja, there is a manual for the usage with Maven provided.
Since the Elasticsearch repository is build with Gradle, I also need to use Gradle instead of Maven. Testing the suggested example Symja project, the following build.gradle
(which I basically generated by using gradle init
and adjusted a little) imports the library flawlessly:
ANSWER
Answered 2021-Apr-29 at 17:51For the sake of completeness, I want to subsume at least the part of the solutions given by @axelclk and @IanGabes that worked. First of all, it seemed to be necessary to manually add all implicit dependencies plus the repositories they originate from to server
's build.gradle
, corresponding to the pom.xml
files of matheclipse-core
and of matheclipse-external
:
QUESTION
I have a grid where the there is 2 named columns ([name]
and [crown]
) and an unknown number of rows. Each row will have a name
element and may or may not have a crown
element. What I want to happen is for the maximum number of rows be 3, so that when there is more than 3 rows, they appear in a new adjacent set of 2 columns.
For example, with the following data:
...ANSWER
Answered 2021-Apr-28 at 20:54You are specifying grid-template-columns: [name] 1fr [crown] 1fr
. Therefore, you will always receive two fractions in the end.
I advise you to wrap divs with a [name]
and a [crown]
in an additional div, which will be like one cell. And with rule grid-auto-flow: column
, we can get the desired result.
QUESTION
So, I've got an interesting one - Cloudformation allows the use of Mustache templates (via Pystache) to build configuration files via AWS::CloudFormation::Init (They bury this a few paragraphs down, but it's there).
This is useful to me, as I need to write out some of the network details to create a config file for an OpenVPN server. So far, so good.
But here's where it gets tricky - AWS likes CIDR notation (and I need to use the same parameter for AWS resources and for this). But OpenVPN likes to use the older IP Range and Netmask format. I'm currently trying to find a good way to convert this. I can either use CloudFormation functions or try to find a way to do the transformation in Mustache.
I can get the IP Range using a combination of Fn::Select and Fn::Split to pull the first half of the CIDR, but deriving the netmask currently has me stumped.
Example so far
...ANSWER
Answered 2021-Apr-29 at 00:48Ok, so I wound up solving this using a simple CloudFormation Macro that takes a CIDR range and returns a JSON object containing the CIDR, subnet and netmask - for example, given 192.168.1.0/24, it would return the following JSON fragment for including in a CloudFormation template
QUESTION
I am trying to install a specific jq
version in my virtual pyenv environment with the command below:
ANSWER
Answered 2021-Apr-10 at 00:46I did not expect this, but this issue has been resolved after I updated pip3
with this command:
QUESTION
How do you display raw code in vue
?
For example I have a . Putting that in my template renders the component. What do i do if i just want to render the text as you see it
? I tried double mustache (
{{ }}
) and that still renders the component. Do i have to install a markdown library?
ANSWER
Answered 2021-Mar-26 at 16:48Simplest solution is to replace <
and >
with <
and >
QUESTION
Tests and the strange behaviour: running at command CLI but not as file.
test1.py. Script:
...ANSWER
Answered 2021-Mar-21 at 19:40chevron.render
returns a string. When not in REPL mode, Python only prints things when asked to:
QUESTION
I'm trying to create a Spring Boot application but I'm having a trouble that I cannot fix properly. I'm using JPA repositories to use SQL Database and I wanna save the birth date of users, but I don't know how to format dates (like dd/MM/yyyy) when showing them via Mustache templating.
This is my code:
Entity:
...ANSWER
Answered 2021-Mar-09 at 23:08Spring Boot uses JMustache as templating engine for mustache files. By default, JMustache uses String.valueOf
to convert objects to strings when rendering a template.
Therefore the annotation is ignored and dates are just converted to:
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