mustache | scale Detection of Chromatin Loops | Genomics library

 by   ay-lab Python Version: v1.0.1 License: MIT

kandi X-RAY | mustache Summary

kandi X-RAY | mustache Summary

mustache is a Python library typically used in Artificial Intelligence, Genomics applications. mustache has no bugs, it has no vulnerabilities, it has build file available, it has a Permissive License and it has low support. You can install using 'pip install mustache' or download it from GitHub, PyPI.

Mustache (Multi-scale Detection of Chromatin Loops from Hi-C and Micro-C Maps using Scale-Space Representation) is a tool by Abbas Roayaei Ardakany, Halil Tuvan Gezer, Stefano Lonardi and Ferhat Ay (ferhatay@lji.org).
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            kandi-support Support

              mustache has a low active ecosystem.
              It has 24 star(s) with 5 fork(s). There are 2 watchers for this library.
              OutlinedDot
              It had no major release in the last 12 months.
              There are 10 open issues and 10 have been closed. On average issues are closed in 31 days. There are no pull requests.
              It has a neutral sentiment in the developer community.
              The latest version of mustache is v1.0.1

            kandi-Quality Quality

              mustache has no bugs reported.

            kandi-Security Security

              mustache has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

            kandi-License License

              mustache is licensed under the MIT License. This license is Permissive.
              Permissive licenses have the least restrictions, and you can use them in most projects.

            kandi-Reuse Reuse

              mustache releases are available to install and integrate.
              Deployable package is available in PyPI.
              Build file is available. You can build the component from source.
              Installation instructions, examples and code snippets are available.

            Top functions reviewed by kandi - BETA

            kandi has reviewed mustache and discovered the below as its top functions. This is intended to give you an instant insight into mustache implemented functionality, and help decide if they suit your requirements.
            • R Regression analysis
            • Get the separator from a file
            • Read a CMOLER file
            • Read a cooler file
            • Read HIC file
            • Normalize a sparse matrix
            • Read a pymipy csv file
            • Read a file into a dictionary
            • Test if c is a chr
            • Process a block
            • Return the indices of the diagonal elements
            • Compute the difference between two contours
            • Compute a mustache variant
            • Parse HiC - C header
            • Read a null - terminated string from a file - like object
            • Parse command line arguments
            • Parse PB value
            Get all kandi verified functions for this library.

            mustache Key Features

            No Key Features are available at this moment for mustache.

            mustache Examples and Code Snippets

            Mustache ,Examples
            Pythondot img1Lines of Code : 6dot img1License : Permissive (MIT)
            copy iconCopy
            mustache -f ./data/chr21_5kb.RAWobserved -b ./data/chr21_5kb.KRnorm -ch 21 -r 5kb -pt 0.1 -o chr21_out.tsv -st 0.8
            
            mustache -f ./4DNFIPC7P27B.hic -ch 1 2 X -r 1kb -pt 0.01 -o hic_out.tsv
            
            wget ftp://cooler.csail.mit.edu/coolers/hg19/Rao2014-GM12878-  
            Mustache ,Installation,Conda
            Pythondot img2Lines of Code : 6dot img2License : Permissive (MIT)
            copy iconCopy
            git clone https://github.com/ay-lab/mustache
            conda env create -f ./mustache/environment.yml
            conda activate mustache
            
            1) python -m mustache  -f ./mustache/data/chr21_5kb.RAWobserved -b ./mustache/data/chr21_5kb.KRnorm -ch 21 -r 5kb -o chr21_out5.tsv -  
            Mustache ,Installation,Github
            Pythondot img3Lines of Code : 3dot img3License : Permissive (MIT)
            copy iconCopy
            git clone https://github.com/ay-lab/mustache
            cd mustache
            ./mustache/mustache.py ...arguments
              

            Community Discussions

            QUESTION

            gitlab ci runner doesnt know mocha
            Asked 2021-May-27 at 14:14

            I have a gitlab.ci with this jobs:

            ...

            ANSWER

            Answered 2021-May-27 at 14:02

            Add this line before RUN npm install:

            Source https://stackoverflow.com/questions/67723022

            QUESTION

            How does a SpringBoot controller know to return a mustache template instead of a String
            Asked 2021-May-22 at 06:21

            I'm walking through a tutorial on Spring Boot using Kotlin. I'm new to Kotlin and Spring, though I've already worked in a couple of different MVC style frameworks in other languages so get the gist.

            Something that I don't get as I work through this tutorial is how in these controller methods:

            ...

            ANSWER

            Answered 2021-May-22 at 06:21

            When you return a String, it is used as a view name. This view name is then resolved into a View implementation.

            In the case of Mustache, Spring Boot auto-configures a MustacheViewResolver bean. This bean is then picked up by Spring MVC and used to turn your "blog" into a MustacheView backed by your Mustache template. It is then combined with the Model that was passed into your controller method and rendered.

            Source https://stackoverflow.com/questions/67643461

            QUESTION

            Passing Node.js varaibles from back-edn to front-end using express
            Asked 2021-May-17 at 21:06

            I would like to pass the IP variable obtained from request.headers['x-forwarded-for'] in my server.js file to my webpage index.html and displaying it. I have tried passing it in the

            I already red some questions on Google but nothing helped me ;( here the full code: https://replit.com/@AnonHexo/wolframV3
            Thanking in advance!

            ...

            ANSWER

            Answered 2021-May-17 at 21:06

            If you are using Moustache as a template engine (with Consolidate), please check its documentation about how the templating works: https://www.npmjs.com/package/mustache

            I think what you need there is to use {{ ip }} in the script like:

            Source https://stackoverflow.com/questions/67525874

            QUESTION

            How does the library "Symja" need to be imported with Gradle in order to work with the Elasticsearch server module?
            Asked 2021-Apr-29 at 17:51

            For a project I wanted to extend Elasticsearch and therefore need to use the package Symja. In the Github for Symja, there is a manual for the usage with Maven provided.

            Since the Elasticsearch repository is build with Gradle, I also need to use Gradle instead of Maven. Testing the suggested example Symja project, the following build.gradle (which I basically generated by using gradle init and adjusted a little) imports the library flawlessly:

            ...

            ANSWER

            Answered 2021-Apr-29 at 17:51

            For the sake of completeness, I want to subsume at least the part of the solutions given by @axelclk and @IanGabes that worked. First of all, it seemed to be necessary to manually add all implicit dependencies plus the repositories they originate from to server's build.gradle, corresponding to the pom.xml files of matheclipse-core and of matheclipse-external:

            Source https://stackoverflow.com/questions/67066752

            QUESTION

            Repeating CSS grid layout with named columns for every X number of rows
            Asked 2021-Apr-29 at 02:32

            I have a grid where the there is 2 named columns ([name] and [crown]) and an unknown number of rows. Each row will have a name element and may or may not have a crown element. What I want to happen is for the maximum number of rows be 3, so that when there is more than 3 rows, they appear in a new adjacent set of 2 columns.

            For example, with the following data:

            ...

            ANSWER

            Answered 2021-Apr-28 at 20:54

            You are specifying grid-template-columns: [name] 1fr [crown] 1fr. Therefore, you will always receive two fractions in the end.

            I advise you to wrap divs with a [name] and a [crown] in an additional div, which will be like one cell. And with rule grid-auto-flow: column, we can get the desired result.

            Source https://stackoverflow.com/questions/67305056

            QUESTION

            Deriving IP Range and Netmask using Cloudformation and Pystache
            Asked 2021-Apr-29 at 00:48

            So, I've got an interesting one - Cloudformation allows the use of Mustache templates (via Pystache) to build configuration files via AWS::CloudFormation::Init (They bury this a few paragraphs down, but it's there).

            This is useful to me, as I need to write out some of the network details to create a config file for an OpenVPN server. So far, so good.

            But here's where it gets tricky - AWS likes CIDR notation (and I need to use the same parameter for AWS resources and for this). But OpenVPN likes to use the older IP Range and Netmask format. I'm currently trying to find a good way to convert this. I can either use CloudFormation functions or try to find a way to do the transformation in Mustache.

            I can get the IP Range using a combination of Fn::Select and Fn::Split to pull the first half of the CIDR, but deriving the netmask currently has me stumped.

            Example so far

            ...

            ANSWER

            Answered 2021-Apr-29 at 00:48

            Ok, so I wound up solving this using a simple CloudFormation Macro that takes a CIDR range and returns a JSON object containing the CIDR, subnet and netmask - for example, given 192.168.1.0/24, it would return the following JSON fragment for including in a CloudFormation template

            Source https://stackoverflow.com/questions/67138269

            QUESTION

            pip3 can't install jq on macOS due to ruby dependencies
            Asked 2021-Apr-10 at 21:01

            I am trying to install a specific jq version in my virtual pyenv environment with the command below:

            ...

            ANSWER

            Answered 2021-Apr-10 at 00:46

            I did not expect this, but this issue has been resolved after I updated pip3 with this command:

            Source https://stackoverflow.com/questions/67027634

            QUESTION

            How do you display raw html code in vue if you dont want it to be rendered like a component
            Asked 2021-Mar-26 at 16:48

            How do you display raw code in vue?

            For example I have a . Putting that in my template renders the component. What do i do if i just want to render the text as you see it ? I tried double mustache ({{ }}) and that still renders the component. Do i have to install a markdown library?

            ...

            ANSWER

            Answered 2021-Mar-26 at 16:48

            Simplest solution is to replace < and > with < and >

            Source https://stackoverflow.com/questions/66819601

            QUESTION

            Hello on terminal not run when importing
            Asked 2021-Mar-21 at 19:40

            Tests and the strange behaviour: running at command CLI but not as file.

            test1.py. Script:

            ...

            ANSWER

            Answered 2021-Mar-21 at 19:40

            chevron.render returns a string. When not in REPL mode, Python only prints things when asked to:

            Source https://stackoverflow.com/questions/66736713

            QUESTION

            Spring Boot & Mustache formatting date
            Asked 2021-Mar-09 at 23:08

            I'm trying to create a Spring Boot application but I'm having a trouble that I cannot fix properly. I'm using JPA repositories to use SQL Database and I wanna save the birth date of users, but I don't know how to format dates (like dd/MM/yyyy) when showing them via Mustache templating.

            This is my code:

            Entity:

            ...

            ANSWER

            Answered 2021-Mar-09 at 23:08

            Spring Boot uses JMustache as templating engine for mustache files. By default, JMustache uses String.valueOf to convert objects to strings when rendering a template.

            Therefore the annotation is ignored and dates are just converted to:

            Source https://stackoverflow.com/questions/66555533

            Community Discussions, Code Snippets contain sources that include Stack Exchange Network

            Vulnerabilities

            No vulnerabilities reported

            Install mustache

            For convenience, we provide several ways to install Mustache.

            Support

            Similar to Hi-C analysis tools previously developed by our lab (Selfish and FitHiC), we allow a simple, readable textual input format for Mustache. To use this input mode, we require a contact map and a bias/normalization vector file. Bias file is a list of normalization factors. This means contact counts will be divided by their corresponding factors.
            Find more information at:

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