songbird | Vanilla regression methods for microbiome differential

by biocore Python Version: v1.0.4 License: BSD-3-Clause

X-Ray Key Features Code Snippets(3)Community Discussions(3)Vulnerabilities Install Support

kandi X-RAY | songbird Summary

songbird is a Python library typically used in Telecommunications, Media, Advertising, Marketing applications. songbird has no bugs, it has no vulnerabilities, it has build file available, it has a Permissive License and it has low support. You can download it from GitHub.

If you have any "comment rows" in your metadata -- for example, a #q2:types row -- you will need to delete these before running Songbird standalone, since otherwise standalone Songbird will interpret these rows as actual samples. (We're planning on addressing this in the future.).

Support

Quality

Security

License

Reuse

Support

songbird has a low active ecosystem.

It has 47 star(s) with 25 fork(s). There are 9 watchers for this library.

It had no major release in the last 12 months.

There are 44 open issues and 66 have been closed. On average issues are closed in 105 days. There are no pull requests.

It has a neutral sentiment in the developer community.

The latest version of songbird is v1.0.4

Quality

songbird has 0 bugs and 0 code smells.

Security

songbird has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

songbird code analysis shows 0 unresolved vulnerabilities.

There are 0 security hotspots that need review.

License

songbird is licensed under the BSD-3-Clause License. This license is Permissive.

Permissive licenses have the least restrictions, and you can use them in most projects.

Reuse

songbird releases are available to install and integrate.

Build file is available. You can build the component from source.

Installation instructions, examples and code snippets are available.

songbird saves you 540 person hours of effort in developing the same functionality from scratch.

It has 1317 lines of code, 53 functions and 16 files.

It has medium code complexity. Code complexity directly impacts maintainability of the code.

Top functions reviewed by kandi - BETA

kandi has reviewed songbird and discovered the below as its top functions. This is intended to give you an instant insight into songbird implemented functionality, and help decide if they suit your requirements.

Perform multinomial regression .
Runs training .
Summarize a regression .
Generate a random multinomial model .
Filter the table based on the given formula .
Plots the convergence plot .
Convert columns to float64 .
Read metadata from file .
Splits training .
Disables logging output .

Get all kandi verified functions for this library.

songbird Key Features

No Key Features are available at this moment for songbird.

songbird Examples and Code Snippets

6. Validating by comparing to null/baseline models ,6.1. Generating a null model,6.1.2. Null models and QIIME 2 + Songbird

Python

Lines of Code : 19

License : Non-SPDX (NOASSERTION)

Copy

# Generate a null model
qiime songbird multinomial \
	--i-table redsea.biom.qza \
	--m-metadata-file data/redsea/redsea_metadata.txt \
	--p-formula "1" \
	--p-epochs 10000 \
	--p-differential-prior 0.5 \
	--p-training-column Testing \
	--p-summary-in

6. Validating by comparing to null/baseline models ,6.2. Generating baseline models

Python

Lines of Code : 19

License : Non-SPDX (NOASSERTION)

Copy

# Generate a baseline model
qiime songbird multinomial \
	--i-table redsea.biom.qza \
	--m-metadata-file data/redsea/redsea_metadata.txt \
	--p-formula "Depth" \
	--p-epochs 10000 \
	--p-differential-prior 0.5 \
	--p-training-column Testing \
	--p-su

9. More information,9.3. Citations

Python

Lines of Code : 10

License : Non-SPDX (NOASSERTION)

Copy

@article{morton2019establishing,
  title={Establishing microbial composition measurement standards with reference frames},
  author={Morton, James T and Marotz, Clarisse and Washburne, Alex and Silverman, Justin and Zaramela, Livia S and Edlund, Anna

Community Discussions

Trending Discussions on songbird

Trying to create Dataframe from lists of zip using Pandas. wanted data table result

How can I make a for loop that uses entire string instead of just one element

How to open a text in the same html page by not creating a same page?

QUESTION

Trying to create Dataframe from lists of zip using Pandas. wanted data table result

Asked 2022-Feb-11 at 03:13

I'm scraping website and come to the part where to put it in Dataframe. I tried to follow this answer but no expected output.

Here's my whole code

...

ANSWER

Answered 2022-Feb-11 at 03:13

Some how coin_name is twice as long as your other lists. Once you fix that you can do this:

Source https://stackoverflow.com/questions/71073567

QUESTION

How can I make a for loop that uses entire string instead of just one element

Asked 2021-Nov-10 at 16:04

I have a list from a dataframe

print(crypto)

...

ANSWER

Answered 2021-Nov-10 at 16:04

EDIT: using code from AKX's answer, and building on it:

Source https://stackoverflow.com/questions/69916182

QUESTION

How to open a text in the same html page by not creating a same page?

Asked 2021-Feb-25 at 06:56

For example, when I open a topic, it would open in the same html page, not redirect to another address: http://web.archive.org/web/20090409012115/http://www.europeangoldfinch.net/home.htm#

I want to make it exactly like this (clicking on a topic). I downloaded the source files from web archive, but when I click on topic nothing opens up even though the topic text is in that html code.

This is exactly what I want to do: https://errorsea.com/how-to-change-text-onclick-event-javascript/#Syntax

EDIT: Thanks everyone for the help, I figured it out, I downloaded a website from web.archive.org, and it didn't work well, but I managed to get it working with the javascript included with the website.

Code:

...

ANSWER

Answered 2021-Jan-10 at 19:07

I really don't understand want you actually want but from the look of things, if I'm correct you want to use a #URL system in your page. So I assume you want the page viewport to be on blog0 div when the user clicks on

Source https://stackoverflow.com/questions/65586734

Community Discussions, Code Snippets contain sources that include Stack Exchange Network

Vulnerabilities

No vulnerabilities reported

Install songbird

First off, make sure that conda is installed.
First, you'll need to make sure that QIIME 2 is in between (version 2019.7 and 2020.6) is installed before installing Songbird. In your QIIME 2 conda environment, you can install Songbird by running:.
Q. I've installed Songbird, but when I try to run it I get an error that says something like ImportError: /lib64/libc.so.6: version `GLIBC_2.15' not found. What's going on here?.

Support

In case the above examples didn't cut it, here are some links to external documentation that may be helpful, sorted very roughly into "less" and "more" technical categories:. If you have any other resources you'd like to see added here, feel free to send a PR/issue.

Find more information at: