cameo | cameo - computer aided metabolic engineering & optimization

by biosustain Python Version: 0.13.0 License: Apache-2.0

X-Ray Key Features Code Snippets Community Discussions(10)Vulnerabilities Install Support

kandi X-RAY | cameo Summary

cameo is a Python library. cameo has no bugs, it has no vulnerabilities, it has build file available, it has a Permissive License and it has low support. You can download it from GitHub.

cameo - computer aided metabolic engineering & optimization

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Quality

Security

License

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Support

cameo has a low active ecosystem.

It has 83 star(s) with 32 fork(s). There are 24 watchers for this library.

It had no major release in the last 12 months.

There are 32 open issues and 55 have been closed. On average issues are closed in 73 days. There are 1 open pull requests and 0 closed requests.

It has a neutral sentiment in the developer community.

The latest version of cameo is 0.13.0

Quality

cameo has 0 bugs and 0 code smells.

Security

cameo has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

cameo code analysis shows 0 unresolved vulnerabilities.

There are 0 security hotspots that need review.

License

cameo is licensed under the Apache-2.0 License. This license is Permissive.

Permissive licenses have the least restrictions, and you can use them in most projects.

Reuse

cameo releases are available to install and integrate.

Build file is available. You can build the component from source.

cameo saves you 1422393 person hours of effort in developing the same functionality from scratch.

It has 620398 lines of code, 1187 functions and 112 files.

It has medium code complexity. Code complexity directly impacts maintainability of the code.

Top functions reviewed by kandi - BETA

kandi has reviewed cameo and discovered the below as its top functions. This is intended to give you an instant insight into cameo implemented functionality, and help decide if they suit your requirements.

Return a dict that can be used by distutils
Construct a ConfigParser from a root directory
Get the project root directory
Extract the version information
Run the model
Determines if the individual is higher than the given fitness
Find a product by name
Add a candidate to the archive
Sanitize the model identifiers
Create adapter reactions
Load a model from a file or file
Displays the flux on a map
Generate javascript code for rendering
Convert inchi to ASCII
Create a space for a model
Builds an OptKnock problem
Determine the free free frequency of a given model
Generate a list of design designs
Compute the Lmoma problem
Plot the reaction
Extract the version information from the command line
Construct a universal reaction model
Runs the CofactorSwapOptimization algorithm
Creates a dual model
Create the versioneer config file
Run the heuristic

Get all kandi verified functions for this library.

cameo Key Features

No Key Features are available at this moment for cameo.

cameo Examples and Code Snippets

No Code Snippets are available at this moment for cameo.

Community Discussions

Trending Discussions on cameo

Activity Diagram: Reusing Activity/Action With different inherited type of object flow as output

Output elements in CSV columns when scraping a website with python

How to see/save all rows of an object in Python?

How use relative paths on MJML with mjml-react for email templates

select2 display drop down images and text in wrap text mode

Display images in dropdown select2

SysML/UML Simulating a nested State Machine Diagram in an Activity Diagram

SysML/UML Using properties from instances in decisions

Python - getting image name and extension from url what does not end with file filename extension

Is there any way to make this code shorter, and more efficient?

QUESTION

Activity Diagram: Reusing Activity/Action With different inherited type of object flow as output

Asked 2021-Jun-06 at 18:30

I have a question regarding modeling on an Activity Diagram that has been bothering me for some time and I was not able to find any answers / Convention anywhere.

Here is an example to better understand my question:

Let say that I have two class named "flat" and "house". both are a generalization of the class "housing". housing contain an attribute "residents" for the person living in it. flat contain an attributes "floor" that says at which floor the flat is.

Here is the class diagram:

In an activity diagram, I want to represent the action of giving persons a housing. this action can take either house or flat as input (so the use of "housing" type for the input pin is correct I think) as well as an undefined number of people. I want this action to give an updated house or flat as output (not an updated housing as this would mean that information specific to the house or flat would be lost. I don't really know if I must create two actions (one for house and another for flats) or if there is a way to reuse the action for both class and have a correct output out of it.

Here is the activity Diagram:

My question is: how to represent in an activity diagram, an action that is the same for different type of Object flows as input, and that give the updated Object flow as output (that may be therefore of different type)?

nb:

all type of object flow are class and inherit from a same other class.
I'm representing this in modelio but first had this issue in Cameo.
I'm Trying to fit as best as I can within the rules of UML Language.

...

ANSWER

Answered 2021-Jun-06 at 18:30

The two flows (top object and lower control) in the blue frame could stay as they are. Give flat floor would commence only when it receives a Flat object and the control token is sent. In order to make the right action sort of optional I would just use the object flow, thus only triggering when a Flat object is passed. That would just be enough and no additional control flow is needed.

To make things clear I would also add a guarded flow from the Assign action to an exit reading [ house was assigned ] or the like.

Source https://stackoverflow.com/questions/67860329

QUESTION

Output elements in CSV columns when scraping a website with python

Asked 2021-Jan-21 at 01:28

I need to scrape a book web site and save the information (price, code, fees, etc.) in a CSV file as a table, but when I try to save the data in the CSV file, I have the title name repeated several times and the information is vertical, I need to place it horizontally and at the end of the information in a book, I need the next information to be on the bottom line.

...

ANSWER

Answered 2021-Jan-21 at 00:33

Python's CSV module might help you. Using the CSV module makes it easy. The only thing you need to do is to append the items to a list and then output them all at once, see my_list in the code below.

Source https://stackoverflow.com/questions/65819110

QUESTION

How to see/save all rows of an object in Python?

Asked 2021-Jan-16 at 14:09

I am following this tutorial in a package.

As you can see, the second output(result.solutions) has 684 rows × 12 columns.

Questions

How can I save them as a text or CSV file to view all the rows separately? or is there anyway to observe all those rows together on jupyter?

Thanks

...

ANSWER

Answered 2021-Jan-16 at 14:09

Your first question should be in what object the solutions are contained in. From your code, we need to investigate what the result of DifferentialFVA.run() is.

Source https://stackoverflow.com/questions/65750195

QUESTION

How use relative paths on MJML with mjml-react for email templates

Asked 2020-Dec-21 at 07:48

Describe the bug

The use of relative paths render broken links on the email recipient
The use of links from images on the web generate broken links on the email, except for the case that these links have a termination which explicitly names an image, with its type (jpg, etc), e.g src="http:://somelink....jpg"

To Reproduce

Relative path does not work:

...

ANSWER

Answered 2020-Dec-21 at 07:48

In the general case:

Relative addresses work on your system as you're developing your email.

Sadly, there's no way to send external files with your email. Hence, files you can find with relative addresses on your system are unlikely to be present on your recipient's system.

You'll want to put your files at Internet-reachable URLs and refer to them that way in your emails.

As you observed, that works well when you reference the entire path and filename, including the extension.

In your case:

The package you're using strives to be a way to send images with your email. Nifty. If it works, it hides lots of complexity.

I notice about that package that it hasn't been updated in two years or more. If it worked then, it'd be no surprise that it no longer works. Good luck!

Extras: Be careful with sending your email. Every email client I've heard about changes your HTML if you use cut-and-paste to put the HTML in their editor for sending. If they change your HTML, you're not sending what you thought you were sending. Bummer. The fix is to use an email service provider. Some are free for a limited number of emails sent. Pick one that doesn't change your HTML; some do!

You can test your HTML by pasting it into the free service https://putsmail.com (don't click the option to inline your CSS). They'll send the email to the email account of your choice and you can check it in the email client of your choice.

By the way, a great source of MJML support is https://slack.mjml.io/.

Source https://stackoverflow.com/questions/65294771

QUESTION

select2 display drop down images and text in wrap text mode

Asked 2020-Aug-27 at 14:17

I need to display text and images in a wrap text as shown below pic

After selection its not displaying the image, neither it wraps up (I want both image and wrapped chip to be displayed)

I have tried with

...

ANSWER

Answered 2020-Aug-27 at 14:17

Using a custom flex layout for option

Source https://stackoverflow.com/questions/63617289

QUESTION

Display images in dropdown select2

Asked 2020-Aug-27 at 11:57

I need to display the images for each of the items in a select2

I have tried with

...

ANSWER

Answered 2020-Aug-27 at 11:57

The formatSelection and formatResult options have been renamed to templateSelection and templateResult in select2 v4.0

https://select2.org/upgrading/migrating-from-35#renamed-templating-options

Source https://stackoverflow.com/questions/63615339

QUESTION

SysML/UML Simulating a nested State Machine Diagram in an Activity Diagram

Asked 2020-Jul-02 at 07:01

I am still new to SysML and UML and the simulation of those diagrams. I am using Cameo Systems Modeler 19.0.

Context: My problem concerns the continuous simulation of an activity diagram in which a state machine diagram is nested. In the activity diagram I have a Call Behaviour Action which calls the state machine diagram. After this call behaviour action there are other actions to be executed. When I simulate the activity diagram the simulation switches to the called state machine diagram without any problem. Also the simulation of this state machine diagram is fully functional.

Now onto my problem: When I finalize the simulation of the state machine diagram by choosing states, path and their triggers so that I get to the Final State Node, it terminates the simulation of the State Machine Diagram (as expected). But the simulation won't continue executing in the parenting activity diagram.

Am I doing something wrong? Are you not supposed to be able to simulate these kinds of diagrams nested like that? Am I expecting something of Cameo Systems Modeler, that this programm just can't do?

Thanks for your help! If my description is not sufficient, I will happily provide a .mdzip as a minimal example!

...

ANSWER

Answered 2020-Jun-29 at 16:44

In UML and SysML state machines, reaching a termination pseudo state means that the scope to which the behaviour that is defined by the state machine is terminated (when it is on the top scope in the state machine diagram). This is treated in different tools diffently. Some tools use (by default or always) the state machines as mester for simulation and when the topmost state machine enters a termination pseudo state the simulation is stoped, even if it was triggered from an activity.

There is a further kind of end pseudo state for state machines, it is called an exit point. Exit points trigger that the current scope is left. And as you dont want to stop your simulation this is waht you could use. An exit point is denoted by a hallow circle with cross.

Thought: Plenty of tools deviate from whats defined in UML and SysML especially when simulating dynamic behaviours. So there might be some special options in Cameo that possibly need some consideration. One solution to some of the tools is that you create a master state machine, that triggers your master activity.

Source https://stackoverflow.com/questions/62636737

QUESTION

SysML/UML Using properties from instances in decisions

Asked 2020-Jun-25 at 16:09

I'm new to UML and SysML and I am using Cameo Systems Modeler. My problem is concerning activity diagrams.

My plan is to use the values I specified under "slots" in an instance for a following decision. I specified one property "test" as type Integer. Its value is 7. I dragged the instance on my activity diagram in which it appeares as a value specification with one output pin. I want to use the value 7 in the following decision: e.g. two activity edges: test<4 or test>4?). I tried naming the output pin "test" and connecting it via object flow with the decision node (the value specification node is ofc also connected to that via control flow.). Unfortunately it doesnt work this way.

I hope you can help me. Thanks in advance!

...

ANSWER

Answered 2020-Jun-25 at 16:09

for me the output pin result of the value specification corresponding to your instance must be linked to the input port object of a Read Structural Feature Action whose have test as structuralFeature and its output port result is linked to the decision node.

The output port of the value specification values your instance, not the value of test for it

Source https://stackoverflow.com/questions/62578859

QUESTION

Python - getting image name and extension from url what does not end with file filename extension

Asked 2020-Jun-04 at 13:41

Basically, my goal is to fetch the filename, extension and the content of an image by its url. And my fuction should work for both of these urls:

easy case: https://image.shutterstock.com/image-photo/bright-spring-view-cameo-island-260nw-1048185397.jpg

hard case (does not end with filename.extension ): https://images.unsplash.com/photo-1472214103451-9374bd1c798e?ixlib=rb-1.2.1&ixid=eyJhcHBfaWQiOjEyMDd9&w=1000&q=80

Currently, what I have looks like this:

...

ANSWER

Answered 2020-Jun-04 at 13:41

One way is to query the content type:

Source https://stackoverflow.com/questions/62195412

QUESTION

Is there any way to make this code shorter, and more efficient?

Asked 2020-May-31 at 02:25

I was learning javascript, and trying different projects/coding challenges. After writing this code I realised that it is 43 lines (this is for a basic image slider), and it could not be the most efficient method for doing this. Is there any way to shorten my code, or make it more efficient? This script says when you press right, it goes to the next image, and when you press left, it goes to the previous image

...

ANSWER

Answered 2020-May-31 at 02:25

You could do something like this:

Source https://stackoverflow.com/questions/62110766

Community Discussions, Code Snippets contain sources that include Stack Exchange Network

Vulnerabilities

No vulnerabilities reported

Install cameo

You can download it from GitHub.
You can use cameo like any standard Python library. You will need to make sure that you have a development environment consisting of a Python distribution including header files, a compiler, pip, and git installed. Make sure that your pip, setuptools, and wheel are up to date. When using pip it is generally recommended to install packages in a virtual environment to avoid changes to the system.

Support

For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .

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