brainrender | python based software for visualization

by brainglobe Python Version: 2.1.8 License: BSD-3-Clause

X-Ray Key Features Code Snippets Community Discussions(1)Vulnerabilities Install Support

kandi X-RAY | brainrender Summary

brainrender is a Python library. brainrender has no bugs, it has no vulnerabilities, it has build file available, it has a Permissive License and it has low support. You can install using 'pip install brainrender' or download it from GitHub, PyPI.

!! NOTE: you're looking at brainrender v2.0 We have recently released a new version of brainrender, version 2.0 (:tada:). This consists of an entire re-writing of the whole library to make the code cleaner, more compact. easier to read and easier to use. We've also included a new GUI packaged with brainrender. However, this does mean that code written to work with previous versions of brainrender will need to be adjusted slightly to work with the newer versions. If you are transitioning to the new brainrender version, please reade the guide we have put together about moving from v1.0 to v2.0.

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Quality

Security

License

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Support

brainrender has a low active ecosystem.

It has 427 star(s) with 63 fork(s). There are 23 watchers for this library.

There were 8 major release(s) in the last 6 months.

There are 7 open issues and 157 have been closed. On average issues are closed in 100 days. There are no pull requests.

It has a neutral sentiment in the developer community.

The latest version of brainrender is 2.1.8

Quality

brainrender has 0 bugs and 0 code smells.

Security

brainrender has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

brainrender code analysis shows 0 unresolved vulnerabilities.

There are 0 security hotspots that need review.

License

brainrender is licensed under the BSD-3-Clause License. This license is Permissive.

Permissive licenses have the least restrictions, and you can use them in most projects.

Reuse

brainrender releases are available to install and integrate.

Deployable package is available in PyPI.

Build file is available. You can build the component from source.

Installation instructions, examples and code snippets are available.

It has 2876 lines of code, 203 functions and 75 files.

It has high code complexity. Code complexity directly impacts maintainability of the code.

Top functions reviewed by kandi - BETA

kandi has reviewed brainrender and discovered the below as its top functions. This is intended to give you an instant insight into brainrender implemented functionality, and help decide if they suit your requirements.

Adds a brain region to the scene
Convert obj to list
Add objects
Get a plane
Get a list of regions
Add keyframe
Check camera parameters
Get camera object
Add brain region from tree view
Add brain regions to the scene
Create the left navbar
Update the css
Draw the root box
Generate keyframes
Configure logging
Convert a griddata
Make Streamlines
Slice a scene
Create a ruler actor from a surface surface
Make a list of neurons
Slice actors
Create a new video
Add objects to the scene
Create a ruler between two points
Get gene - experiment data
Toggle the list item in the list
Update actor s properties
Draw spikes on the given frame

Get all kandi verified functions for this library.

brainrender Key Features

No Key Features are available at this moment for brainrender.

brainrender Examples and Code Snippets

No Code Snippets are available at this moment for brainrender.

Community Discussions

Trending Discussions on brainrender

In Brainrender is there a way to at labels and stop the brain from load upside down?

QUESTION

In Brainrender is there a way to at labels and stop the brain from load upside down?

Asked 2020-May-20 at 17:03

I am using brainrender to show where I've placed some electrodes. However, whenever I load brainrender my brain always loads upside down:

brainrender

Is there a way to fix this? Or do I just have to manually flip it every time?

I was also wondering if any one knew of a way to display/add text labels to the 3D image the brainrender makes? I did look at these functions, but as far as I can tell neither one actually places a label on a brain area.

labels:

...

ANSWER

Answered 2020-May-20 at 17:03

Below I've copied the important parts of how to resolve the issues/questions posted here. All credit for an answer to this question goes to the developer of BrainRender(FedeClaudi on GitHub). I am copying the key information he provide my team in case the following link to the developers answer stops working: https://github.com/BrancoLab/BrainRender/issues/70

The developer of the BrainRender tool updated this tool to version 0.4.0.0 which allows users to permanently add labels to brain areas:

pip install -U brainrender

You should also update using:

Source https://stackoverflow.com/questions/61780079

Community Discussions, Code Snippets contain sources that include Stack Exchange Network

Vulnerabilities

No vulnerabilities reported

Install brainrender

You can install brainrender with:.

Support

For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .

Find more information at: