cellfinder | Automated 3D cell detection and registration of whole-brain | Machine Learning library

by brainglobe Python Version: 1.3.0rc2 License: BSD-3-Clause

X-Ray Key Features Code Snippets Community Discussions(1)Vulnerabilities Install Support

kandi X-RAY | cellfinder Summary

cellfinder is a Python library typically used in Artificial Intelligence, Machine Learning, Deep Learning applications. cellfinder has no bugs, it has no vulnerabilities, it has build file available, it has a Permissive License and it has low support. You can install using 'pip install cellfinder' or download it from GitHub, PyPI.

cellfinder takes a stitched, but otherwise raw whole-brain dataset with at least two channels:.

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Quality

Security

License

Reuse

Support

cellfinder has a low active ecosystem.

It has 139 star(s) with 37 fork(s). There are 16 watchers for this library.

There were 5 major release(s) in the last 6 months.

There are 15 open issues and 108 have been closed. On average issues are closed in 175 days. There are 1 open pull requests and 0 closed requests.

It has a neutral sentiment in the developer community.

The latest version of cellfinder is 1.3.0rc2

Quality

cellfinder has no bugs reported.

Security

cellfinder has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

License

cellfinder is licensed under the BSD-3-Clause License. This license is Permissive.

Permissive licenses have the least restrictions, and you can use them in most projects.

Reuse

cellfinder releases are available to install and integrate.

Deployable package is available in PyPI.

Build file is available. You can build the component from source.

Installation instructions are not available. Examples and code snippets are available.

Top functions reviewed by kandi - BETA

kandi has reviewed cellfinder and discovered the below as its top functions. This is intended to give you an instant insight into cellfinder implemented functionality, and help decide if they suit your requirements.

Run cell candidates
Get downsampled space
Check if a points file exists
Update the plot if necessary
Generate heatmap of points
Create a pandas DataFrame from a list of points
Summarise the transformed points
Run analysis on cells
Extract cube from stack
Crop the image to the given plane
Pad image to correct size
Adjusts the size of a plane
Get cell labels
Save the cell count
Setup main layout
Analyze cell positions
Saves a yaml file
Create argument parser for cellfinder
Raises CommandLineInputError
Create registration directory
Interpolate coordinates in a tuple
Get cellfinder directory
Get the background layer
Runs extraction
Returns the number of RAM needed for the given cube extraction
Prepare cellfinder

Get all kandi verified functions for this library.

cellfinder Key Features

No Key Features are available at this moment for cellfinder.

cellfinder Examples and Code Snippets

No Code Snippets are available at this moment for cellfinder.

Community Discussions

Trending Discussions on cellfinder

How to use column of strings to find that same string in another sheet, and paste a corresponding value from sheet 1 next to the found value?

QUESTION

How to use column of strings to find that same string in another sheet, and paste a corresponding value from sheet 1 next to the found value?

Asked 2019-Feb-04 at 15:43

I am working on generating some automated reports. To reiterate, I would like my code to look at each "string" in Sheet1 column E (ignoring blanks), search for that value in another sheet/workbook, and paste the "single" contained in Sheet1 column D (ignoring blanks, if E is blank, D will be blank) to the left of the string found in the search earlier.

The receiving data sheets are widely dispersed and in a variety of formats, but the one constant is that each position for data input has a unique tag in an adjacent column that is also found in the primary data storage sheet. I don't have that much experience in VBA yet, and was wondering how some others would solve this problem in a dynamic way that wont break the minute a new column is added.

My current code is a jumbled mess, so any pointers, ideas, general strategies would be appreciated. I am trying to get away from using Sheets().select and other references like this, but I'm not sure how to do that yet.

...

ANSWER

Answered 2019-Feb-04 at 15:43

One thing to note is that in What:="location" when you put location in quotations, you're telling your find function to look exclusively for the value "location" instead of the variable location which you've set to the value of the ActiveCell in the loop.

Additionally, I'd avoid using Goto unless you're exiting a deeply nested loop. You could rewrite your code to avoid using Select, ActiveCell, Goto and correcting your .Find like:

Source https://stackoverflow.com/questions/54518534

Community Discussions, Code Snippets contain sources that include Stack Exchange Network

Vulnerabilities

No vulnerabilities reported

Install cellfinder

You can install using 'pip install cellfinder' or download it from GitHub, PyPI.
You can use cellfinder like any standard Python library. You will need to make sure that you have a development environment consisting of a Python distribution including header files, a compiler, pip, and git installed. Make sure that your pip, setuptools, and wheel are up to date. When using pip it is generally recommended to install packages in a virtual environment to avoid changes to the system.

Support

For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .

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