hifive | Tools for handling HiC and 5C data

 by   bxlab Python Version: 1.5.7 License: MIT

kandi X-RAY | hifive Summary

kandi X-RAY | hifive Summary

hifive is a Python library. hifive has no bugs, it has no vulnerabilities, it has build file available, it has a Permissive License and it has low support. You can install using 'pip install hifive' or download it from GitHub, PyPI.

Tools for handling HiC and 5C data
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            kandi-support Support

              hifive has a low active ecosystem.
              It has 21 star(s) with 6 fork(s). There are 8 watchers for this library.
              OutlinedDot
              It had no major release in the last 12 months.
              There are 7 open issues and 9 have been closed. On average issues are closed in 28 days. There are no pull requests.
              It has a neutral sentiment in the developer community.
              The latest version of hifive is 1.5.7

            kandi-Quality Quality

              hifive has 0 bugs and 0 code smells.

            kandi-Security Security

              hifive has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.
              hifive code analysis shows 0 unresolved vulnerabilities.
              There are 0 security hotspots that need review.

            kandi-License License

              hifive is licensed under the MIT License. This license is Permissive.
              Permissive licenses have the least restrictions, and you can use them in most projects.

            kandi-Reuse Reuse

              hifive releases are not available. You will need to build from source code and install.
              Deployable package is available in PyPI.
              Build file is available. You can build the component from source.
              hifive saves you 7443 person hours of effort in developing the same functionality from scratch.
              It has 15372 lines of code, 304 functions and 48 files.
              It has high code complexity. Code complexity directly impacts maintainability of the code.

            Top functions reviewed by kandi - BETA

            kandi has reviewed hifive and discovered the below as its top functions. This is intended to give you an instant insight into hifive implemented functionality, and help decide if they suit your requirements.
            • Main function
            • Load data from counts files
            • Parse the fragment pairs from the given fragments
            • Filter the fragments using FiveC
            • Load fragments from file
            • Runs the find_fend_fend_corrections
            • Exchange gradients
            • Calculate the quality for each node
            • Close the stream
            • Run find_fend_fend_fend_corrections
            • Calculate k - cutoff corrections
            • Save the history to HDF5 file
            • Loads the hdf5 file
            • Use setuptools
            • Setup the package
            • Load bins from file
            • Load data from a bam file
            • Find the binning correction for each segment
            • Loads the model
            • Run find_bability_fragment_fragment_frances
            • Run find_expressions on the project
            • Calculate replication quality
            • Load data from a bed file
            • Load data from file
            • Generate a heatmap for a given region
            • Load features from file
            • Compute a heatmap between two regions
            Get all kandi verified functions for this library.

            hifive Key Features

            No Key Features are available at this moment for hifive.

            hifive Examples and Code Snippets

            No Code Snippets are available at this moment for hifive.

            Community Discussions

            QUESTION

            can't access value of input when i have it inside foreach loop (using post method)
            Asked 2019-Nov-10 at 17:30

            I have a form contains one input (type button) and one image. when i click on the button it supposed to delete the image (submit the form and get the value of the input which is the id of the image, using post method). But i can't access the value of the input when i have it inside foreach loop. because every input created inside foreach has the same name. https://i.imgur.com/ed9Vv9m.png

            i tried var_dump and there is just null value.

            this is the form inside the camera view:

            ...

            ANSWER

            Answered 2019-Nov-02 at 00:53

            Add hidden input field in your form block with value of gallery ID, like this:

            Source https://stackoverflow.com/questions/58665314

            Community Discussions, Code Snippets contain sources that include Stack Exchange Network

            Vulnerabilities

            No vulnerabilities reported

            Install hifive

            You can install using 'pip install hifive' or download it from GitHub, PyPI.
            You can use hifive like any standard Python library. You will need to make sure that you have a development environment consisting of a Python distribution including header files, a compiler, pip, and git installed. Make sure that your pip, setuptools, and wheel are up to date. When using pip it is generally recommended to install packages in a virtual environment to avoid changes to the system.

            Support

            For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .
            Find more information at:

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            Install
          • PyPI

            pip install hifive

          • CLONE
          • HTTPS

            https://github.com/bxlab/hifive.git

          • CLI

            gh repo clone bxlab/hifive

          • sshUrl

            git@github.com:bxlab/hifive.git

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