moFF | modest Feature Finder to extract MS1 intensities

by compomics Python Version: 2.0.3 License: Non-SPDX

X-Ray Key Features Code Snippets Community Discussions(4)Vulnerabilities Install Support

kandi X-RAY | moFF Summary

moFF is a Python library. moFF has no bugs, it has no vulnerabilities and it has low support. However moFF build file is not available and it has a Non-SPDX License. You can download it from GitHub.

moFF is an OS independent tool designed to extract apex MS1 intensity using a set of identified MS2 peptides. It currently uses a Thermo library to directly extract data from Thermo Raw spectrum files, eliminating the need for conversions from other formats. Moreover, moFF also allows to work directly with mzML files.

Support

Quality

Security

License

Reuse

Support

moFF has a low active ecosystem.

It has 31 star(s) with 10 fork(s). There are 8 watchers for this library.

It had no major release in the last 12 months.

There are 4 open issues and 31 have been closed. On average issues are closed in 76 days. There are no pull requests.

It has a neutral sentiment in the developer community.

The latest version of moFF is 2.0.3

Quality

moFF has 0 bugs and 0 code smells.

Security

moFF has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

moFF code analysis shows 0 unresolved vulnerabilities.

There are 0 security hotspots that need review.

License

moFF has a Non-SPDX License.

Non-SPDX licenses can be open source with a non SPDX compliant license, or non open source licenses, and you need to review them closely before use.

Reuse

moFF releases are available to install and integrate.

moFF has no build file. You will be need to create the build yourself to build the component from source.

Installation instructions are not available. Examples and code snippets are available.

moFF saves you 641 person hours of effort in developing the same functionality from scratch.

It has 1488 lines of code, 32 functions and 5 files.

It has low code complexity. Code complexity directly impacts maintainability of the code.

Top functions reviewed by kandi - BETA

kandi has reviewed moFF and discovered the below as its top functions. This is intended to give you an instant insight into moFF implemented functionality, and help decide if they suit your requirements.

Calculate apex_multithr
Configure the logger
Compute the log time for a given region
Compute peak peak peak
Build a dataframe containing the matched peptide
Run mbr
Map peptide residues to mappings
Check that the input is a default PS input file
Check the columns names in col_list
Estimate the quality measure of a peptide
Saves results to a Pandas DataFrame
Compute the peptide matrix
Scans a MZML file and returns a list of dictionaries
Check if output folder exists
Check if file exists
Configure a logger
Detaches the handler
Removes all json files in the local directory

Get all kandi verified functions for this library.

moFF Key Features

No Key Features are available at this moment for moFF.

moFF Examples and Code Snippets

No Code Snippets are available at this moment for moFF.

Community Discussions

Trending Discussions on moFF

Creating custom JSON from existing JSON using Python

Bluetooth device is disconnected when app is closed

Pairing (Connecting) to a new device or paired does not work in app

Fit a generalized linear model (glm) with a categorical variable of month using the function monthglm() in R

QUESTION

Creating custom JSON from existing JSON using Python

Asked 2021-Jul-12 at 05:20

(Python beginner alert) I am trying to create a custom JSON from an existing JSON. The scenario is -

I have a source which can send many set of fields but I want to cherry pick some of them and create a subset of that while maintaining the original JSON structure.

Original Sample

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ANSWER

Answered 2021-Jul-12 at 05:15

Kind of like this:

Source https://stackoverflow.com/questions/68342126

QUESTION

Bluetooth device is disconnected when app is closed

Asked 2021-Feb-20 at 08:27

I am new to BLE implementaion within an app but I am able to connect to a BLE device in the app.

When the app is closed the connection is broken but I need to be able to be connected even when app is closed because I will be receiving data from a microcontroller.

Can anyone give me advice or help me to fix the issue?

Is it due to only being connected because it is waiting for data to be sent and when app is closed I have an issue?

...

ANSWER

Answered 2021-Feb-20 at 08:27

You can use FroegroundService for working in the background, after your app is closed, so there will be non-closable notification and your app will continue work. This is the best solution in new Android versions, because simple services will be killed by Android. You can find more info about working with FroegroundService in this article.

Source https://stackoverflow.com/questions/66253404

QUESTION

Pairing (Connecting) to a new device or paired does not work in app

Asked 2021-Feb-09 at 11:24

I am creating an android app to receive sensor data. I am able to discover both paired devices on the phone as well as nearby available Bluetooth devices. The issue is when I click on one of the devices either from the paired list or the discovered device list I am not able to connect to the device.

The code:

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ANSWER

Answered 2021-Feb-07 at 06:46

After creating a handler in the main thread, the program creates a looper object, but the sub-thread does not. Therefore, you need to execute Looper.prepare() before using the Toast, and then execute Looper.loop(); after using the Toast.

Source https://stackoverflow.com/questions/66083924

QUESTION

Fit a generalized linear model (glm) with a categorical variable of month using the function monthglm() in R

Asked 2020-Aug-12 at 19:40

Problem

I have a data frame (see below) and I want to fit a general linear model (glm) with a categorical variable of the month using the function monthglm() based on the covariates of season and year.

After I run the following function, which was written by Barnett, A.G., Dobson, A.J. (2010) Analysing Seasonal Health Data. Springer. (see below), I keep on getting this error message.

If anyone can help, I would be deeply appreciative.

Load packages

...

ANSWER

Answered 2020-Aug-12 at 19:40

I was able to get the model to run with the following simple change to the code and your function call. I named it monthglm2 to distinguish it from the package function. With calling your data df:

Source https://stackoverflow.com/questions/63381467

Community Discussions, Code Snippets contain sources that include Stack Exchange Network

Vulnerabilities

No vulnerabilities reported

Install moFF

You can download it from GitHub.
You can use moFF like any standard Python library. You will need to make sure that you have a development environment consisting of a Python distribution including header files, a compiler, pip, and git installed. Make sure that your pip, setuptools, and wheel are up to date. When using pip it is generally recommended to install packages in a virtual environment to avoid changes to the system.

Support

For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .

Find more information at: