searchgui | Highly adaptable common interface for proteomics search | Genomics library

by compomics Java Version: Current License: No License

X-Ray Key Features Code Snippets Community Discussions(2)Vulnerabilities Install Support

kandi X-RAY | searchgui Summary

searchgui is a Java library typically used in Healthcare, Pharma, Life Sciences, Artificial Intelligence, Genomics, Docker applications. searchgui has no bugs, it has no vulnerabilities, it has build file available and it has low support. You can download it from GitHub.

SearchGUI is a a highly adaptable open-source common interface for configuring and running proteomics search and de novo engines, currently supporting X! Tandem, MyriMatch, MS Amanda, MS-GF+, OMSSA, Comet, Tide, Andromeda, MetaMorpheus, Novor and DirecTag.

Support

Quality

Security

License

Reuse

Support

searchgui has a low active ecosystem.

It has 29 star(s) with 17 fork(s). There are 16 watchers for this library.

It had no major release in the last 6 months.

There are 9 open issues and 335 have been closed. On average issues are closed in 26 days. There are no pull requests.

It has a neutral sentiment in the developer community.

The latest version of searchgui is current.

Quality

searchgui has no bugs reported.

Security

searchgui has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

License

searchgui does not have a standard license declared.

Check the repository for any license declaration and review the terms closely.

Without a license, all rights are reserved, and you cannot use the library in your applications.

Reuse

searchgui releases are not available. You will need to build from source code and install.

Build file is available. You can build the component from source.

Installation instructions are not available. Examples and code snippets are available.

Top functions reviewed by kandi - BETA

kandi has reviewed searchgui and discovered the below as its top functions. This is intended to give you an instant insight into searchgui implemented functionality, and help decide if they suit your requirements.

Initialize the components
Action button
Open the file chooser for the user
Enable or disable the search settings
Organizes the output
Get the total uncompressed size
Get the total uncompressed size of the given run
Creates the MetaMorp parameter file
Writes a list of modifications to the file
Returns the OMS vulnerability index for the given settings
Starts the launcher
Creates the configuration file
Download a peptideshaker
Called when the search is completed
Creates the genetic file
Runs the searchCLI process
Sets the process builder
Creates the Exhaustion file
Create the NODor parameters file
Start the search GUI
Load the location of the search engine
Creates the parameters file
Loads the search engines
Checks whether the startup is valid
Create the parameters file
Get the options as a string

Get all kandi verified functions for this library.

searchgui Key Features

No Key Features are available at this moment for searchgui.

searchgui Examples and Code Snippets

No Code Snippets are available at this moment for searchgui.

Community Discussions

Trending Discussions on searchgui

Checkbox variable not updating in tkinter

Wildcard search not working for path-index

QUESTION

Checkbox variable not updating in tkinter

Asked 2019-Nov-12 at 20:49

I am a bit new to Tkinter. I'm running Python 3.7.4 on Windows x64. I am trying to make a simple checkbox driven menu that will pass certain values based on the checked boxes. Here is the code:

main.py

...

ANSWER

Answered 2019-Nov-12 at 20:49

I'm not 100% sure why this is happening, but here's my best guess based on my experiments.

IntVar's constructor takes an optional argument, which should be a Tk instance if it is provided. If you don't supply a value, it will use whatever Tk was created first. In your case, the win1 object.

The IntVar will update itself whenever the Tk instance gets a chance to clear out its event queue. But this is a problem -- when your winu window is running, your win1 window hangs, and has no chance to update your IntVars.

Or possibly the window is not hanging, but it simply ignores changes made to its IntVars by widgets that don't belong to it. userr and passr are owned by winu, so win1 chooses not to (or can't) listen to them.

One possible solution is to provide winu to your IntVars, so they don't use your win1 object by default.

Source https://stackoverflow.com/questions/58825771

QUESTION

Wildcard search not working for path-index

Asked 2018-Dec-18 at 11:56

Here is the query which gives the desired results:

...

ANSWER

Answered 2018-Dec-14 at 14:01

Term-options don't apply to range constraints, only facet-options do. And a facet-option wildcarded does not exist. Range constraints are ideal for selecting ranges, e.g. num GT x AND num LT y, but not suited for mid-string matches.

I think you'll have to create a word or value constraint for the same path to be able to use wildcards on it. Unfortunately, you can't just create a word or value constraint on a path as specific as you have in your collectionId constraint. You'd have to create a field with that path.

HTH!

Source https://stackoverflow.com/questions/53777633

Community Discussions, Code Snippets contain sources that include Stack Exchange Network

Vulnerabilities

No vulnerabilities reported

Install searchgui

You can download it from GitHub.
You can use searchgui like any standard Java library. Please include the the jar files in your classpath. You can also use any IDE and you can run and debug the searchgui component as you would do with any other Java program. Best practice is to use a build tool that supports dependency management such as Maven or Gradle. For Maven installation, please refer maven.apache.org. For Gradle installation, please refer gradle.org .

Support

Does Not Start I - Do you have Java installed? Download the latest version of Java here and try again. (You only need the JRE version (and not the JDK version) to run SearchGUI.). Does Not Start II - Have you unzipped the zip file? You need to unzip the file before double clicking the jar file. If you get the message "A Java Exception has occurred", you are most likely trying to run SearchGUI from within the zip file. Unzip the file and try again. Does Not Start III - Is SearchGUI installed in a path containing special characters, i.e. [, %, æ, ø, å, etc? If so, move the whole folder to a different location or rename the folder(s) causing the problem and try again. (Note that on Linux SearchGUI has to be run from a path not containing spaces). Unidentified Developer - If you run SearchGUI on a Mac you can get the warning "SearchGUI" can't be opened because it is from an unidentified developer. To escape this warning control-click on the file icon and then select "Open." This will give you the option of opening it regardless of its unidentified source. This only has to be done once for each SearchGUI version.

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