elf | convenience functions for large-scale bio
kandi X-RAY | elf Summary
kandi X-RAY | elf Summary
This repository implements common functionality for (large-scale) bio-medical image analysis:. See examples for some usage examples. For processing large data on a cluster, check out cluster_tools, which uses a lot of elf functionality internally.
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Top functions reviewed by kandi - BETA
- Two - pass filter
- Create a checkerboard with the given roi coordinates
- Creates a checkerboard
- Divide blocks into a checkerboard
- R Calculate the distance transform using the distance transform
- Calculate the min and max of a block
- Create a blocking block
- Calculate the maximum number of threads
- Visualize a plate
- Apply a chunked transformation
- Builds a grid graph from pixel - long - range offsets
- Apply operation to x
- Calculate the area of a time series
- Generate the visual representation of theractive and reponse
- R Find elements in x
- Copy a dataset
- Convert a mesh into segmentation
- Perform a multi - connected neural network
- Calculates a distance transform using a distance transform
- Visualizes tracks
- Downscale data to outscale
- Extract tracks as volume
- Performs pixel - weighted performance experiments on the solution problem
- Compute the registration
- R Solve a tensor product for the given graph
- Transform coordinates to local coordinates
- Load a multicut problem
elf Key Features
elf Examples and Code Snippets
Community Discussions
Trending Discussions on elf
QUESTION
I have problem with my bpf program. I getting error while loading this program. my bpf program is:
...ANSWER
Answered 2021-Jun-15 at 07:28TL;DR. You should check that the pointer returned by bpf_map_lookup_elem
is not NULL.
With the following logs, the BPF verifier is telling you that, when it reaches the dereference of my_pid
, the pointer may still have a NULL value. It thus contains a map value or a NULL value, i.e., map_value_or_null
.
QUESTION
I'm working on an aws/amazon-freertos project. In there I found some unusual error "A stack overflow in task iot_thread has been detected".
Many time I got this error and somehow I managed to remove it by changing the code.
I just want to know what this error means actually?
As per what I know, it simply means that the iot_thread ask stack size is not sufficient. So it's getting overflow.
Is this the only reason why this error comes or can there be another reason for this?
If yes then where should I increase the stack size of the iot_thread task?
Full Log:
...ANSWER
Answered 2021-Jun-14 at 22:05It simply means that the iot_thread ask stack size is not sufficient. [...] Is this the only reason why this error comes or can there be another reason for this?
Either it is insufficient you your stack usage is excessive (due to recursion error or instantiation of instantiation of large objects or arrays. Either way the cause is the same. Whether it is due insufficient stack or excessive stack usage is a matter of design an intent.
If yes then where should I increase the stack size of the iot_thread task?
The stack for a thread is assigned in the task creation function. For a dynamically allocated stack that would be the xTaskCreate()
call usStackDepth
parameter:
QUESTION
Here is my problem, I build an archive with "xc32-ar.exe" with this command line.
...ANSWER
Answered 2021-Jun-13 at 18:02QUESTION
I am studying ROP on Arm64, I posted my thread here Return Oriented Programming on ARM (64-bit)
However a new/separate issue about choosing rop gadgets has arisen which requires the opening of a new thread. So to sum up i am studying ROP vulnerability on ARM 64 bit and i am trying to test it using a very simple c code (attached to the previous thread). I'am using ropper tool in order to search for gadgets to build my rop chain. But when i overflow the pc with the address of the gadget i got this within gdb:
...ANSWER
Answered 2021-Jun-13 at 14:57Your gadget is at 0x55555558f8
.
Ropper shows the addresses of gadgets the way the ELF header describes the memory layout of the binary. According to that header:
- The file contents 0x0-0xadc are to be mapped as
r-x
at address 0x0. - The file contents 0xdb8-0x1048 are to be mapped as
rw-
at address 0x10db8.
Account for page boundaries and you get one page mapping file offset 0x0 to address 0x0 as executable and two pages mapping file offset 0x0 to address 0x10000 as writeable.
From your GDB dump, these mappings are created at 0x5555555000 and 0x5555565000 in the live process, respectively.
QUESTION
I'm working on a project with lots of C wrappers around M68000 asm calls. A few of these calls return a success/fail status on the condition code register, so it would be ideal to 'goto' a C label depending on the status of CC. However, no matter what permutations I try, I am constantly getting syntax errors from the compiler.
(This is gcc 10.2.0 --with-cpu=m68000)
Example code:
...ANSWER
Answered 2021-Jun-10 at 19:40Yes, it is supported. I think the problem is your code, which has a couple of errors:
To use the goto feature, you need to start the inline assembly statement with the
asm goto
keywords. You are missing thegoto
.The label operands are numbered sequentially after the input operands (and of course there cannot be outputs). So
failed
is operand 4, and therefore you need to refer to it withbcc %l4
, not%l0
.
With these changes I'm able to compile the code.
By the way, I don't know much about m68k assembly, but it looks like you are clobbering register d1
, along with whatever the _BURAM
subroutine clobbers, yet those have not been declared as clobbers. Shouldn't you add "d1"
and the rest along with "cc"
?
Also, it seems like maybe you are expecting the operands d0_fcode
, a0_info
, etc, to be put in those specific registers, presumably because _BURAM
expects them there. Do you have those variables defined register asm
to tell the compiler about that, e.g. register int d0_fcode asm("d0");
? Otherwise it could for instance choose d4
for the d0_fcode
operand. In my test it happens by chance that they get put in the desired registers, without explicitly asking, but that is not safe to rely on.
QUESTION
I want to install the JDK 16 on a RPi 3B and I downloaded the Linux ARM 64 Compressed Archive from the Oracle site.
Every time I run the command to check the version of java I get the same error:
bash: ./java: cannot execute binary file: Exec format error
I already tried to untar it again and download the archive from zero, but I get the same error every time. Considering the RPi 3B not able to support the JDK16 for some reason, I downloaded and installed the Kit on a RPi 4 too, but the result is always the same. I used the checksum to make sure the downloaded archive was intact and it was.
Am I downloading the wrong package or have I missed anything important?
...ANSWER
Answered 2021-Jun-10 at 15:45It seems you are running a 32 bit ARM Linux (armv7l), you therefore cannot execute a 64 bit aarch64 JDK. You need to install the 32 bit version, the same way you installed the 64 bit JDK, or to install a 64 bit Linux distribution on your system.
QUESTION
I have a code below. It is part of a dynamic shared library which is loaded by qemu program (a C program) using dlopen.
...ANSWER
Answered 2021-Jun-08 at 10:15The extern "C"
makes no difference when declaring variables, it matters only for functions.
The reason is that functions in C++ can be overlapped but variables can't.
for example:
QUESTION
I am trying to learn how ELF files are structured and probably how to make one manually.
I am working on aarch64 Linux OS, the ELF files I am inspecting are of elf64-littleaarch64
format.
Also I try to learn by myself, however I got stuck with some questions...
- When I do
xxd code
, the first number in each line of the output specifies the address of bytes in the file. But whenobjdump -D code
, the first number is something like4000b0
, however corresponds to000000b0
inxxd
. Why is there a four at the beginning? - In
objdump
, the bytecode is for example11000a94
, which 'means'add w20, w20, #2
in assembly. I know, that11
is the opcode, but what does000a94
mean? I thought, it should be the parameters, but I am adding the value 2 and can't find the number 2 in it.
If you have a good article to read, or can help me explain this, I will be very grateful!
...ANSWER
Answered 2021-Jun-09 at 11:15Well, I was too fast asking this question, but now, I will answer it too.
40
at the beginning of the addresses inobjdump
is the hex representation of the char "@", which means "at" and points to an address, very simple!- Little Endian has CPU addresses stored in 5 bits instead of 6 or 8. That means, that I should look for the binary value of the
objdump
code:11000a94
-->10001000000000000101010010100
, where it can be divided into[10001][00000000000010][10100][10100]
with[opcode][value][first address][second address]
Both answers are wrong, see the accepted answer. I will still let them here, though
QUESTION
i am making a program and decided to make my own exceptions so i wrote the following header-only file:
...ANSWER
Answered 2021-Jun-07 at 14:46Have you tried catching std::exception instead of the exception class?
Like this:
QUESTION
My Qt Creator is 4.11 which is based on Qt 5.14 in Ubuntu 17.04. Due to ongoing development, I have not updated Qt Creator and Ubuntu to avoid disturbing the working setup.
Whenever I run it in Debug build mode, it compiles fine and runs the executable. But then if I check the "build--*" directory, the binary file (viz. .exe) disappears and all the .o file created from .cpp files shrink to 18 bytes from few MBs!!
Have searched online, but couldn't find such unique problem. Currently the workaround is to clean-build every time, with painful long wait.
Kindly suggest which configuration will fix this issue?
Update:
With some help from the comment section, another distinguishing detail has surfaced. When I visit the build-*
folder for a good project & this project and check file main.o
in terminal then following output comes
good project: _main.o: ELF 64-bit LSB relocatable, x86-64, version 1 (GNU/Linux), not stripped
...bad (this) project:_main.o: gzip compressed data, from NTFS filesystem (NT)
ANSWER
Answered 2021-Jun-05 at 05:32This issue is not related to Qt, but related to our own code. We have a module which Gzips all files in a given directory recursively.
However, if the directory path is empty, then original binary's path is taken as a zipping directory. Hence all the object files were zipped and somehow the binary file itself was disappearing.
I have put a necessary check and now this will be avoided.
Thanks to user @G.M. who asked me in the comments section to run command file
. From that I got the hint that instead of below output:
ELF 64-bit LSB relocatable, x86-64, version 1
it was giving gzip output:
gzip compressed data, from NTFS filesystem (NT)
This led me to believe that there has to be something with our recently added Gzip mechanism.
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