gffutils | GFF and GTF file manipulation and interconversion

by daler Python Version: 0.13 License: MIT

X-Ray Key Features Code Snippets Community Discussions Vulnerabilities Install Support

kandi X-RAY | gffutils Summary

gffutils is a Python library. gffutils has no vulnerabilities, it has build file available, it has a Permissive License and it has low support. However gffutils has 2 bugs. You can install using 'pip install gffutils' or download it from GitHub, PyPI.

GFF and GTF file manipulation and interconversion

Support

Quality

Security

License

Reuse

Support

gffutils has a low active ecosystem.

It has 214 star(s) with 66 fork(s). There are 15 watchers for this library.

There were 1 major release(s) in the last 12 months.

There are 14 open issues and 118 have been closed. On average issues are closed in 906 days. There are 1 open pull requests and 0 closed requests.

It has a neutral sentiment in the developer community.

The latest version of gffutils is 0.13

Quality

gffutils has 2 bugs (1 blocker, 0 critical, 1 major, 0 minor) and 129 code smells.

Security

gffutils has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

gffutils code analysis shows 0 unresolved vulnerabilities.

There are 5 security hotspots that need review.

License

gffutils is licensed under the MIT License. This license is Permissive.

Permissive licenses have the least restrictions, and you can use them in most projects.

Reuse

gffutils releases are not available. You will need to build from source code and install.

Deployable package is available in PyPI.

Build file is available. You can build the component from source.

gffutils saves you 2093 person hours of effort in developing the same functionality from scratch.

It has 4592 lines of code, 288 functions and 35 files.

It has high code complexity. Code complexity directly impacts maintainability of the code.

Top functions reviewed by kandi - BETA

kandi has reviewed gffutils and discovered the below as its top functions. This is intended to give you an instant insight into gffutils implemented functionality, and help decide if they suit your requirements.

Update relations
Merges a file with the same ID
Return a list of keys and values
Return the value of a key
Create a BedTool object for each transcript
Create a cursor
Return a list of children
Construct a relationship query
Convert a GFFFeature object to a SeqFeature object
Print the bin sizes
Clean a GFF file
Sanitize a GFF file
Set pragmas
Open a URL and return a stream
Convert a GT12 file into a BED12 format
Split a key - value pair
Populate the features table
Generate the canonical transcript sequence
Inspect all features
Merge two features
Recursively reconstruct the attributes
Populates the features table
Determine dialect from features
Test if two regions have the same features
Merge two attributes
Create a data iterator

Get all kandi verified functions for this library.

gffutils Key Features

No Key Features are available at this moment for gffutils.

gffutils Examples and Code Snippets

No Code Snippets are available at this moment for gffutils.

Community Discussions

No Community Discussions are available at this moment for gffutils.Refer to stack overflow page for discussions.

Community Discussions, Code Snippets contain sources that include Stack Exchange Network

Vulnerabilities

No vulnerabilities reported

Install gffutils

You can install using 'pip install gffutils' or download it from GitHub, PyPI.
You can use gffutils like any standard Python library. You will need to make sure that you have a development environment consisting of a Python distribution including header files, a compiler, pip, and git installed. Make sure that your pip, setuptools, and wheel are up to date. When using pip it is generally recommended to install packages in a virtual environment to avoid changes to the system.

Support

For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .

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